PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV49155.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family LBD
Protein Properties Length: 267aa    MW: 30143.8 Da    PI: 4.7553
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV49155.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260126.61.2e-39101101100
      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                 aCaaCk++rrkC ++C+lapyfpa+q+k f+nvh+lFG+snv+k+l++l+ e+ r+dam+s++yeAe+r r PvyG+  +i +l+ ql+q+ +el+++ 
  KZV49155.1  10 ACAACKYQRRKCIPSCPLAPYFPANQSKLFRNVHRLFGVSNVTKTLRSLESEDqRDDAMKSIIYEAEMRDRFPVYGCSVIICQLRFQLQQAMSELSAVS 108
                 7************************************************65555******************************************998 PP

      DUF260  99 ee 100
                 ++
  KZV49155.1 109 SQ 110
                 87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089124.6989111IPR004883Lateral organ boundaries, LOB
PfamPF031952.2E-3710107IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MTVKGGTTPA CAACKYQRRK CIPSCPLAPY FPANQSKLFR NVHRLFGVSN VTKTLRSLES  60
EDQRDDAMKS IIYEAEMRDR FPVYGCSVII CQLRFQLQQA MSELSAVSSQ LMAYKDHASN  120
NQMDPYNWPA GGICSSIDVP QLSGNEMVSF ADNQFFLNEN HDFCLESIEN MTRPLMGLNI  180
YPDLVSGNNF APFHAQTDEF DYKQEREVAD QNYQGLQFDD RQSYIETKDA CESSSDSSVK  240
DSMPCMHQVP HSELKDAAAG FSLTAYY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-2921144114LOB family transfactor Ramosa2.1
5ly0_B4e-2921144114LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV49155.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022886739.15e-90LOB domain-containing protein 1-like
TrEMBLA0A2Z7CRZ60.0A0A2Z7CRZ6_9LAMI; LOB domain-containing protein 27-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14492375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47870.15e-42LOB domain-containing protein 27