PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV49018.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family ARF
Protein Properties Length: 1096aa    MW: 121118 Da    PI: 6.4432
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV49018.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B367.71.6e-21122223199
                 EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                 f+k+lt sd++++g +++p++ ae++       ++++++  +l+ +d++  +W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F   ++++++l
  KZV49018.1 122 FCKTLTASDTSTHGGFSVPRRAAEKIfppldftMQPPAQ--ELVARDLHDTVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFI--RDEKQQL 216
                 99*****************************96555444..8************************************************..5578888 PP

                 EEEEE-S CS
          B3  93 vvkvfrk 99 
                 +++ +r+
  KZV49018.1 217 LLGTRRA 223
                 9999886 PP
2Auxin_resp118.94.1e-39248331183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 aahaa+++s+F+v+YnPras+seFv++++k+ k++  +++s+GmRf+m+fete+s +rr++Gt++g+sdldpvrW+nS+Wr+L+
  KZV49018.1 248 AAHAAANNSPFTVFYNPRASPSEFVIPLAKYYKSVCsNQISLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKNSQWRNLQ 331
                 79******************************998669********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.89E-43113251IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.4E-40113237IPR015300DNA-binding pseudobarrel domain
CDDcd100171.69E-18121213No hitNo description
SMARTSM010192.7E-21122224IPR003340B3 DNA binding domain
PfamPF023621.7E-19122223IPR003340B3 DNA binding domain
PROSITE profilePS5086311.491122224IPR003340B3 DNA binding domain
PfamPF065072.5E-34248331IPR010525Auxin response factor
PROSITE profilePS5174528.0849851069IPR000270PB1 domain
PfamPF023093.1E-69871070IPR033389AUX/IAA domain
SuperFamilySSF542776.87E-710041063No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1096 aa     Download sequence    Send to blast
MKSVALVEAG EKKSINPELW QACAGPLVNL PAAGTHVVYF PQGHSEQVAA SMKKDMDAQI  60
PNYTNLPSKL LCLLHSVTLH ADPETDEVYA QMTLQPVSSF DREALLRSDL STKANKPQTD  120
FFCKTLTASD TSTHGGFSVP RRAAEKIFPP LDFTMQPPAQ ELVARDLHDT VWTFRHIYRG  180
QPKRHLLTTG WSLFVSGKRL FAGDSVLFIR DEKQQLLLGT RRANRQPTNL SSSVLSSDSM  240
HIGILAAAAH AAANNSPFTV FYNPRASPSE FVIPLAKYYK SVCSNQISLG MRFRMMFETE  300
ESGTRRYMGT ITGISDLDPV RWKNSQWRNL QVGWDESTAG ERRNRVSIWE IEPVTAPFFI  360
CPTPPFFRSK RPRQPGMPDD DSSDLDNIYR RTMPWLGDDF GIKDTQALPG LSLVQWMNMQ  420
QNSSLSNSIQ PNYMNPLSSS VVQNLAGTDI SRLTGVPSNQ ISQPNNMQLS TSRPTQAVQQ  480
LEQLHKLPIP SSTLNTLGSV IQPQSQSTDV AQSQRQNMIS QALPTNQVQP QVLQSQSPVQ  540
VQNVLQQQQS LLNHQLQRNL SQNPTQMQQQ LIMGHCQQPS LVATQPMDHV SQPLNTSDNQ  600
IQLQFLQRLH QQQQSMLAQQ SPMQQPSQIT QLQDQHKQVF DIPRSTPPSQ MLDVSQATPN  660
VHQSHFVTQQ MVGSNSQSNL RSGVHLPQQP KLLSQQQQLG ILSEVSGHVG ISLNPMTNQL  720
SAGSSSMLTS AAGAGQSAVT EDIPSCSTSP STNNCQNAAL SIMNGRNQRS TMGDEIAQSS  780
AALLNISGLE TMSSNGNLLK DLQPKSDVKP SSVPKSQSHG LFVSQAYINA TGTQVDYLDS  840
SSSATSVLSQ NDVQLHQNNA MCFNTQSMLF RDANHDGDVQ DNPRNDVPFG TNIDSQLEMP  900
MMSETLITKD MVGSGKDFST NLSSGGGMLS VYENPKESQP ELSTSMVSQS FGVPDIAFNS  960
IDSTINEGSF MSRGAWGPPQ IPRMRTYTKV YKRGAVGRSI DIMRYSGYDD LKQDLARRFG  1020
IEGQLEDRQR IGWKLVYVDH ENDVLLVGDD PWEEFVNCVR CIKILSPQEV QQMSLDGDFG  1080
NNVLNQACSS SDNGVN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1671135247388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV49018.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020553508.10.0auxin response factor 19
SwissprotQ6Z2W30.0ARFE_ORYSJ; Auxin response factor 5
TrEMBLA0A2Z7CQG00.0A0A2Z7CQG0_9LAMI; Auxin response factor
STRINGEOY321500.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13022465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19