PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV49005.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family HB-PHD
Protein Properties Length: 620aa    MW: 70967.9 Da    PI: 7.2194
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV49005.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox308.8e-10406450953
                 HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
    Homeobox   9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                 ++ +e L  +F++n  p ++ re L+k+lgL+ ++V  WF+N R+
  KZV49005.1 406 HNAVEKLRLVFAENELPVRSVRESLSKQLGLEFEKVNKWFKNARY 450
                 567899*************************************97 PP
2PHD42.41.6e-14137191150
                 SBTTTSS..TCTTSSEEEBS.SSSSEEETTTSTSSSSHHSHHSS..TBSSHHHHT CS
         PHD   1 rCkvCgk..sdeegelvlCd.gCkewfHlkClglkleseekpeg..ewlCeeCke 50 
                 +C+ C+   +  +++++lCd +C+++fH+kCl+++l++e++p +   w+C+ C++
  KZV49005.1 137 ICSKCELreALPDNDIILCDgTCNRAFHQKCLDPPLSTENIPPEdeGWFCKFCES 191
                 588888754455********56*******************99999*******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579032.06E-15128195IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.102.6E-13133193IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001610.745135192IPR019787Zinc finger, PHD-finger
PfamPF006281.2E-11137191IPR019787Zinc finger, PHD-finger
SMARTSM002496.2E-11137190IPR001965Zinc finger, PHD-type
CDDcd155041.17E-31138189No hitNo description
PROSITE patternPS013590138189IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:1.10.10.602.4E-11390449IPR009057Homeodomain-like
SuperFamilySSF466891.24E-8392450IPR009057Homeodomain-like
PROSITE profilePS5007111.596395455IPR001356Homeobox domain
SMARTSM003899.1E-8397459IPR001356Homeobox domain
CDDcd000861.68E-6398450No hitNo description
PfamPF000463.8E-7406450IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 620 aa     Download sequence    Send to blast
MNDLKVKIAT FRTKESDKSD NKNSKTKKFK RRGDGKKGND HLGLDEASRL QRRTRYLLIK  60
IKLEQNLIDA YSAEGWKGQS REKIKPEKEL QRAKKQILKC KVGIREVIHQ LDLLSSVGRI  120
NNSKVAPDGS VHHEHIICSK CELREALPDN DIILCDGTCN RAFHQKCLDP PLSTENIPPE  180
DEGWFCKFCE SKMEILEATN AHLGTNFSMD SNWQDVFKEE AALPDGGNSI VCHEEEWPSD  240
DSEDGDYDPE NPERIEHCYS GSVSGSDDDD SEYSSSFLGS LEDEPLLSPG RYEDTVMETL  300
DYSLKLSGLD SDEINAGEIL CRPRQRAAVD YTKLYDEMFG KNALETEQIS EDEDWGPTKR  360
KRKRKEADAA STLMTLGETN ENILNEVKKD TPSGKEAKRS IFRLPHNAVE KLRLVFAENE  420
LPVRSVRESL SKQLGLEFEK VNKWFKNARY LALKAEGSNI SVDRGSTQKK TVFETASDEN  480
DEQMTPEDNL TSQTIKTFKK YTRRRNNYLL TNSLMKKKRK QSLKPLDMRK KTPVDFGDDE  540
SLKQLREKAK QAKKKLNSKN RFDMLEAEAN MERLRQIKSR VEKVRQSLLQ LPCQRFDKSN  600
ATASSESVIY VPIAEVKEKR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1358364KRKRKRK
2359364RKRKRK
3359365RKRKRKE
4502519RRRNNYLLTNSLMKKKRK
Functional Description ? help Back to Top
Source Description
UniProtSpecifically binds to the fungal elicitor-responsive DNA element, 5'-CTAATTGTTTA-3', of the gene PR2 promoter.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV49005.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By pathogen infection.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020553239.10.0pathogenesis-related homeodomain protein isoform X2
SwissprotP487851e-151PRH_ARATH; Pathogenesis-related homeodomain protein
TrEMBLA0A2Z7CRL00.0A0A2Z7CRL0_9LAMI; Pathogenesis-related homeodomain protein
STRINGMigut.J00799.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA106842123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29940.21e-145pathogenesis related homeodomain protein A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]