PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV48976.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family TALE
Protein Properties Length: 562aa    MW: 62462 Da    PI: 8.5594
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV48976.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.11.6e-093213581954
                 HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
    Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                 Fe   ++yp+ +++  LAk++gLt +qV++WF N R +
  KZV48976.1 321 FEHflHPYPKDSDKIMLAKQTGLTRSQVSNWFINARVR 358
                 564459******************************88 PP
2BELL118.82.6e-38185256172
        BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                 erqe+q+kkakL+++l+eV++rY+qy++q+q+vis Fe++ag+gsak+Yt++Al++iS++FrcLkdai +qi
  KZV48976.1 185 ERQEIQMKKAKLVNMLDEVEQRYRQYHHQMQIVISWFEQAAGIGSAKSYTAVALQTISKQFRCLKDAILGQI 256
                 79********************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005745.3E-67110254IPR006563POX domain
PfamPF075263.8E-49115252IPR006563POX domain
PROSITE profilePS5007112.147299362IPR001356Homeobox domain
CDDcd000861.14E-11302363No hitNo description
SMARTSM003899.7E-10302366IPR001356Homeobox domain
SuperFamilySSF466894.71E-17303368IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.3E-29305368IPR009057Homeodomain-like
PfamPF059202.1E-18319358IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 562 aa     Download sequence    Send to blast
MSTHEQSQQP NVSALHGFFP GVHYNLYNQQ IALQEARDVS HSHQGLSLSL SSQQQQQPPA  60
PIVYGSSFKQ EREVPSQAVV SAVTMPRGRD AKGSSGGSPS SNSGVSAGLN GMQSVLLSSK  120
YLKAVQELLD EVANVGKGEK SRNESDKEII NGNSTAAFAT DVTNGDGHSG GESSAKRGPE  180
LSTAERQEIQ MKKAKLVNML DEVEQRYRQY HHQMQIVISW FEQAAGIGSA KSYTAVALQT  240
ISKQFRCLKD AILGQIKSAS KSLGEEDSFG DKIEGSRLKY VDNQIRQQRA LQQLGMIQHN  300
AWRPQRGLPE RSVSVLRAWL FEHFLHPYPK DSDKIMLAKQ TGLTRSQVSN WFINARVRLW  360
KPMVEEMYLE EMKENEKNGS EDRNRKREQL HDSVISTSPE EKSKKPNKAG ISSNQEEHHL  420
PKDSTNNRPV VASSEMEKIT QPSPKKQRNP EMIEFASKTT DVGLMSLKFG AERQTRDGFT  480
FMGAPTNFIG GFGSYPMGEL ERFGPEPFQA PYSGNGVSLT LGLPHCESLP MSGSHQTYLP  540
TQTMQIGRRV ELGEPNFITS EY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A7e-16308366563Homeobox protein Meis2
3k2a_B7e-16308366563Homeobox protein Meis2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV48976.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020553279.10.0BEL1-like homeodomain protein 1
SwissprotQ9SJ561e-139BLH1_ARATH; BEL1-like homeodomain protein 1
TrEMBLA0A2Z7CVW30.0A0A2Z7CVW3_9LAMI; Uncharacterized protein
STRINGevm.model.supercontig_104.270.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14782467
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35940.31e-134BEL1-like homeodomain 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]