PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KZV48824.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
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Family | NAC | ||||||||
Protein Properties | Length: 322aa MW: 36034.6 Da PI: 8.7564 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 180.1 | 5.8e-56 | 11 | 138 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kge 98 lppGfrFhPtdeel+++yL +k+++ ++++ ++i +vd++k+ePwdLp+k+k +ekewyfFs rd+ky+tg r+nrat++gyWk+tgkdke++++ ++e KZV48824.1 11 LPPGFRFHPTDEELITYYLINKISDANFTE-RAIGDVDLNKCEPWDLPAKAKMGEKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEIYNSnTSE 108 79*************************999.89***************99999****************************************987889 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 +vg+kktLvfykgrap+gek++Wvmheyr+ KZV48824.1 109 QVGMKKTLVFYKGRAPRGEKSNWVMHEYRI 138 9***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.75E-63 | 10 | 160 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.809 | 11 | 160 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.2E-28 | 12 | 138 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 322 aa Download sequence Send to blast |
MEGGEPKLDK LPPGFRFHPT DEELITYYLI NKISDANFTE RAIGDVDLNK CEPWDLPAKA 60 KMGEKEWYFF SLRDRKYPTG VRTNRATNTG YWKTTGKDKE IYNSNTSEQV GMKKTLVFYK 120 GRAPRGEKSN WVMHEYRIHS KSAYRTTKQD EWVVCRVFQK SIGGKKYPSN QPRGINPFTY 180 NLHDQIPAQN PNIHSQIIMN PENFQFPSRN YVSPADLQEV LVRAGGGGGA SNNMINMPII 240 PPHMNYGGGG GGGCFTISGL NLNLGGGATS THPPMRPMPP PMPPGVNNQD LGSSMMNEGY 300 GGDNRFMGIE NCGDLDNYWS GY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-55 | 11 | 166 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-55 | 11 | 166 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-55 | 11 | 166 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-55 | 11 | 166 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
4dul_A | 2e-55 | 11 | 166 | 17 | 171 | NAC domain-containing protein 19 |
4dul_B | 2e-55 | 11 | 166 | 17 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00277 | DAP | Transfer from AT2G24430 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KZV48824.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011082111.1 | 1e-166 | NAC domain-containing protein 92 | ||||
Refseq | XP_020550032.1 | 1e-166 | NAC domain-containing protein 92 | ||||
TrEMBL | A0A2Z7CVV4 | 0.0 | A0A2Z7CVV4_9LAMI; Transcription factor | ||||
STRING | cassava4.1_011442m | 1e-148 | (Manihot esculenta) | ||||
STRING | XP_002527980.1 | 1e-148 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA152 | 24 | 279 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24430.2 | 1e-105 | NAC domain containing protein 38 |