PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV48769.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family C2H2
Protein Properties Length: 356aa    MW: 41127.9 Da    PI: 8.3962
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV48769.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.72.3e-066182223
                EETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                +C  Cg sF  + +Lk+H+++H
  KZV48769.1 61 TCDECGVSFVKPAHLKQHMQSH 82
                6*******************99 PP
2zf-C2H217.51.1e-0588112123
                 EEET..TTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                 ++Cp  dC+ s++rk++L+rH+  H
  KZV48769.1  88 FTCPmdDCHSSYRRKDHLTRHLLQH 112
                 89*******************9887 PP
3zf-C2H215.55e-05117142123
                 EEET..TTTEEESSHHHHHHHHHH.T CS
     zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                 ++Cp   C+ +F+ +sn+krH +  H
  KZV48769.1 117 FECPveGCKVRFTVQSNMKRHVKEfH 142
                 89********************9988 PP
4zf-C2H218.94.1e-06158182123
                 EEET..TTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                 y Cp   Cgk+F+ +  L++H ++H
  KZV48769.1 158 YACPepGCGKVFKYPCKLRKHENSH 182
                 88********************999 PP
5zf-C2H217.98.3e-06248272223
                 EET..TTTEEESSHHHHHHHHHH.T CS
     zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
                 kC+   C+  Fs++snL++Hi+  H
  KZV48769.1 248 KCNfsGCTSAFSTRSNLNQHIKAvH 272
                 79999****************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00355271942IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.4E-75780IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.34E-1059112No hitNo description
SMARTSM003550.00766082IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.1966087IPR007087Zinc finger, C2H2
PROSITE patternPS0002806282IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.2E-1081114IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0188112IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.6488117IPR007087Zinc finger, C2H2
PROSITE patternPS00028090112IPR007087Zinc finger, C2H2
SuperFamilySSF576674.57E-7115143No hitNo description
Gene3DG3DSA:3.30.160.608.6E-8115143IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0058117142IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.245117147IPR007087Zinc finger, C2H2
PROSITE patternPS000280119142IPR007087Zinc finger, C2H2
SuperFamilySSF576674.64E-5150183No hitNo description
Gene3DG3DSA:3.30.160.608.0E-7155183IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003557.5E-4158182IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.72158187IPR007087Zinc finger, C2H2
PROSITE patternPS000280160182IPR007087Zinc finger, C2H2
SMARTSM003553.3190215IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280192215IPR007087Zinc finger, C2H2
SMARTSM0035531218239IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.6E-8229269IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.14E-9230285No hitNo description
SMARTSM003550.0017247272IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.884247277IPR007087Zinc finger, C2H2
PROSITE patternPS000280249272IPR007087Zinc finger, C2H2
SMARTSM0035519278304IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280280304IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MGNEGDSGRG PIFSDIRRYY CQYCGICRSK KSLISSHVKS QHPEEIAERN EGKGDGEKLN  60
TCDECGVSFV KPAHLKQHMQ SHSIERSFTC PMDDCHSSYR RKDHLTRHLL QHQGKLFECP  120
VEGCKVRFTV QSNMKRHVKE FHDDSDYHSA EFEHPKEYAC PEPGCGKVFK YPCKLRKHEN  180
SHAKLDTVEA FCSEPGCMKY FSNGQCLKEH IRSCHKYILC DECGTKQLKK NIKRHLRMHE  240
GVCTEQIKCN FSGCTSAFST RSNLNQHIKA VHMELKPFTC SIPGCPLKFA FKHVRDNHEI  300
SGCHVYIPGN FEESDEQFRS RPRGGRKRKY PIIESLLRKR VVPPSIEEIT MNEDPW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tf6_A7e-176418319160PROTEIN (TRANSCRIPTION FACTOR IIIA)
1tf6_D7e-176418319160PROTEIN (TRANSCRIPTION FACTOR IIIA)
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1320328RPRGGRKRK
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV48769.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011079244.10.0transcription factor IIIA
SwissprotQ84MZ41e-107TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A2Z7CVU40.0A0A2Z7CVU4_9LAMI; Zinc finger protein 16-like
STRINGMigut.K00168.1.p1e-178(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36442447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.21e-109transcription factor IIIA