PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV47618.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family GRAS
Protein Properties Length: 442aa    MW: 48980.7 Da    PI: 4.7538
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV47618.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3511.9e-107774423374
        GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101
                 ++L+ecA+ ++++d e+a + L rl++ +s+dg+p++R+  yf e L +rl+       +  +p + s+ +s+e + ++k+++e++P++kf+hlt+Nqa
  KZV47618.1  77 KALVECAR-IAESDPENAVKSLLRLEDSVSQDGNPIERVSYYFFESLYRRLSL------QGEKPATVSDATSEEFTPSYKALNEACPFFKFAHLTTNQA 168
                 78*****9.78889**************************************9......333455555556999************************* PP

        GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvk 197
                 Ilea+e+++++Hi+Df+i qG+QW+a+lqaLa+Rp+g+p ++Ri g+ +p+ g   + +l++tg+rL++fAe l+++fef++ v + +++++ +++rv+
  KZV47618.1 169 ILEATEEAKKIHIVDFGIVQGIQWAAFLQALATRPSGKPeRIRISGIPAPALGfsPAASLSATGKRLKDFAELLDLNFEFEP-VLTPIQEMTSSSFRVD 266
                 ***********************************77776**********999999**************************.799************* PP

        GRAS 198 pgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivn 296
                 p+E + Vn++lql++ll++s +  +   + Lkl ksl+P+vv++ e e++ n+  Fl rf  al+yy+a+f+sl+ +l r+s er  vEr +lgr+i  
  KZV47618.1 267 PDEEITVNFMLQLYNLLNDSNEGVQ---SALKLAKSLNPRVVTLGEYEVSSNRVGFLPRFKYALKYYTAIFESLDPNLTRDSPERLQVERLVLGRRIAG 362
                 *****************88777666...9********************************************************************** PP

        GRAS 297 vvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveee..sgslvlgWkdrpLvsvSaWr 374
                 vv  e+++ rer+e +e+Wr  +e aGF+p+ +s++a +qaklll++++ s  y++ e+   g l l W+d pL++vS+Wr
  KZV47618.1 363 VVGLEEQN-RERMEDKESWRLLMEGAGFQPLIFSHYALSQAKLLLSNYSySSMYKLLESspPGFLSLAWNDVPLLTVSSWR 442
                 *******9.9***************************************9999**99883345555**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098557.93849419IPR005202Transcription factor GRAS
PfamPF035146.7E-10577442IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
LSINSSPASD LNRVIFSEPA SSWVPPSSLT LPATEPIVTK ESKPTVTKEN LVVTGDCDTG  60
AFTSSPGISV ESIPVLKALV ECARIAESDP ENAVKSLLRL EDSVSQDGNP IERVSYYFFE  120
SLYRRLSLQG EKPATVSDAT SEEFTPSYKA LNEACPFFKF AHLTTNQAIL EATEEAKKIH  180
IVDFGIVQGI QWAAFLQALA TRPSGKPERI RISGIPAPAL GFSPAASLSA TGKRLKDFAE  240
LLDLNFEFEP VLTPIQEMTS SSFRVDPDEE ITVNFMLQLY NLLNDSNEGV QSALKLAKSL  300
NPRVVTLGEY EVSSNRVGFL PRFKYALKYY TAIFESLDPN LTRDSPERLQ VERLVLGRRI  360
AGVVGLEEQN RERMEDKESW RLLMEGAGFQ PLIFSHYALS QAKLLLSNYS YSSMYKLLES  420
SPPGFLSLAW NDVPLLTVSS WR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-145724421375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development (By similarity). Involved in environmental abiotic stress resistance. May increase the expression of stress-responsive genes (PubMed:20616154). Binds DNA in vitro (By similarity). {ECO:0000250|UniProtKB:Q53K16, ECO:0000250|UniProtKB:Q9SCR0, ECO:0000269|PubMed:20616154}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV47618.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by drought and high salt stresses, and down-regulated by gibberellic acid (GA) treatment, but not by plant hormone abscisic acid (ABA) application in leaves. Under the salt treatment, expression is induced quickly, and it peaks at 3 hours. Under the drought treatment, the expression is not induced immediately, but reaches its maximum at 3 hours. Under the GA treatment, the expression becomes weaker within 5 hours. {ECO:0000269|PubMed:20616154}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011099604.10.0scarecrow-like protein 4
RefseqXP_020554688.10.0scarecrow-like protein 4
SwissprotA0A024B7I00.0SCL7_POPEU; SCARECROW-LIKE protein 7
TrEMBLA0A2Z7CL050.0A0A2Z7CL05_9LAMI; Scarecrow-like protein 4 (Fragment)
STRINGMigut.H00996.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA89052429
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.11e-155GRAS family protein