PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV47516.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family LBD
Protein Properties Length: 305aa    MW: 33995.2 Da    PI: 7.0217
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV47516.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260136.78.4e-4371061100
      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 
                 +CaaCk lrrkC+++Cv+apyfp ++p+kf nvhk+FGasnv kll++l++++reda++sl+yeA+ r+rdPvyG+vg+i+ lq++l+q++ +l+ +k+
  KZV47516.1   7 PCAACKCLRRKCTQECVFAPYFPPDNPQKFTNVHKVFGASNVAKLLNELNPSQREDAVNSLAYEADYRLRDPVYGCVGLISILQHKLKQVQFDLEIAKK 105
                 7**********************************************************************************************9998 PP

      DUF260 100 e 100
                 e
  KZV47516.1 106 E 106
                 7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.76107IPR004883Lateral organ boundaries, LOB
PfamPF031952.7E-427104IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009954Biological Processproximal/distal pattern formation
GO:0009965Biological Processleaf morphogenesis
GO:0048441Biological Processpetal development
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MSSSNSPCAA CKCLRRKCTQ ECVFAPYFPP DNPQKFTNVH KVFGASNVAK LLNELNPSQR  60
EDAVNSLAYE ADYRLRDPVY GCVGLISILQ HKLKQVQFDL EIAKKELATY IGPSAMLPIL  120
NHPGFVQQHP NYGTAYQVMP YNMQPMMGVP TAVPHGGTAV AAAREQEMLR SYEQQQQQQQ  180
NDLVMFNNGF DDTGVQVAAT GFNQMPEPAA EAAMQPSLAL GSYENHQYHH RIQQHAQDVP  240
QSHQPHHLQL QSNELLLQQQ SAATALHQQQ LQQKQQQLVQ PQTSHSQPQP QKAKSEEGRS  300
IGSSC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-4731107114LOB family transfactor Ramosa2.1
5ly0_B2e-4731107114LOB family transfactor Ramosa2.1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtControls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves. Involved in the repression of the homeobox gene BP. {ECO:0000269|PubMed:12787254, ECO:0000269|PubMed:15821980}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV47516.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022896417.11e-128LOB domain-containing protein 36
SwissprotQ9FKZ37e-79LBD36_ARATH; LOB domain-containing protein 36
TrEMBLA0A2Z7CRQ80.0A0A2Z7CRQ8_9LAMI; LOB domain-containing protein 36-like
STRINGXP_009792980.11e-102(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66870.15e-77ASYMMETRIC LEAVES 2-like 1
Publications ? help Back to Top
  1. Kim M,Kim MJ,Pandey S,Kim J
    Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development.
    Plant Cell Physiol., 2016. 57(11): p. 2291-2299
    [PMID:27519310]
  2. Wang Z,Wang Y,Kohalmi SE,Amyot L,Hannoufa A
    SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 2 controls floral organ development and plant fertility by activating ASYMMETRIC LEAVES 2 in Arabidopsis thaliana.
    Plant Mol. Biol., 2016. 92(6): p. 661-674
    [PMID:27605094]