PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV46498.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family B3
Protein Properties Length: 267aa    MW: 29353 Da    PI: 10.3974
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV46498.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.75.7e-1521111199
                 EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                 ffk+l   +   s++l+lp  fa++        +k+  le++sg++W vk+  +k +g+  + +GW+eF  ++ L +g ++ F++++ s f  +v+v+ 
  KZV46498.1  21 FFKIL--QNEKYSQILYLPPAFARKVkC-L--VDKETYLENSSGQRWAVKV--SKVDGSLAIHGGWNEFFTQQSLMVGQVLEFHYIKGSHF--LVRVYG 110
                 78888..66666788*********9952.3..35689**************..*********************************98999..888876 PP

                 S CS
          B3  99 k 99 
                 +
  KZV46498.1 111 R 111
                 5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.91419112IPR003340B3 DNA binding domain
SuperFamilySSF1019363.53E-1919114IPR015300DNA-binding pseudobarrel domain
CDDcd100172.93E-1420109No hitNo description
SMARTSM010192.9E-821112IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.9E-1721114IPR015300DNA-binding pseudobarrel domain
PfamPF023627.9E-1321109IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MSAGKLGAAA KDPPPPIILR FFKILQNEKY SQILYLPPAF ARKVKCLVDK ETYLENSSGQ  60
RWAVKVSKVD GSLAIHGGWN EFFTQQSLMV GQVLEFHYIK GSHFLVRVYG RSGCERISFT  120
KVAAELEPIQ KLDAIPNSKL KRRACKRPIE SGEKDVPEDE EGPRILRKKK ESHVMQKAGS  180
GKSDGAPTIV RRVQSEPMEV LVDVPILFAE KYKSRNVADL ASIKTLANLA AGTPNVVSGI  240
KKGEGGKASL PAKNAELRTR SNATTLP
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV46498.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2Z7CHU90.0A0A2Z7CHU9_9LAMI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22102352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.15e-11B3 family protein