PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV46180.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family M-type_MADS
Protein Properties Length: 224aa    MW: 25481.2 Da    PI: 8.0138
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV46180.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF44.71.7e-141250442
                -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
      SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                +n s r+ +f kR +g++KK  ELS+LC+++++ i +s+
  KZV46180.1 12 SNRSERKASFKKRNKGLMKKVGELSTLCGVDACAITYSE 50
                899**********************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006615.937150IPR002100Transcription factor, MADS-box
SMARTSM004322.7E-17160IPR002100Transcription factor, MADS-box
CDDcd002665.29E-27283No hitNo description
SuperFamilySSF554553.53E-20394IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-6323IPR002100Transcription factor, MADS-box
PfamPF003195.6E-141250IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-62338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MARKKITIAY LSNRSERKAS FKKRNKGLMK KVGELSTLCG VDACAITYSE FQLQPEVWPS  60
PPEARRVLER FMEQPDLERN QFMQTQMSLT RQLIEKTRNK LRRQQTENKR KELTIFMFQC  120
IEGNTDIGKL DVRDRVEMNI VIDDVLREIT ERMEQLKASG KGPSSAYGEG TSVVAAAAKG  180
TGEVPAQPEF VEVSEDPPGF SYLNILMIPI DGVADFAWNN MQEP
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV46180.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011088788.17e-50agamous-like MADS-box protein AGL80
TrEMBLA0A2Z7CGM71e-165A0A2Z7CGM7_9LAMI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15322367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.11e-41AGAMOUS-like 80