PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV45628.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family C2H2
Protein Properties Length: 517aa    MW: 56486.2 Da    PI: 7.6479
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV45628.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.20.0012931123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                y+C++C+k + +  +L  H+r+H
  KZV45628.1  9 YRCNICSKFCVNGKSLGGHMRVH 31
                9********************99 PP
2zf-C2H212.30.00053123142221
                 EETTTTEEESSHHHHHHHHH CS
     zf-C2H2   2 kCpdCgksFsrksnLkrHir 21 
                 +C+ Cgk+Fs+   L  H+r
  KZV45628.1 123 SCGACGKTFSSLRALSGHMR 142
                 699****************8 PP
3zf-C2H210.90.0015154172321
                 ETTTTEEESSHHHHHHHHH CS
     zf-C2H2   3 CpdCgksFsrksnLkrHir 21 
                 C++Cgk F ++  L  H++
  KZV45628.1 154 CKKCGKEFDSPRALFGHMK 172
                 ******************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139120.008832IPR007087Zinc finger, C2H2
SuperFamilySSF576674.51E-9831No hitNo description
PROSITE profilePS501578.912931IPR007087Zinc finger, C2H2
SMARTSM003550.029931IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002801131IPR007087Zinc finger, C2H2
SuperFamilySSF576674.51E-9117144No hitNo description
PROSITE profilePS5015710.866122149IPR007087Zinc finger, C2H2
SMARTSM003550.066122144IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.607.0E-5123145IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.1E-4124145IPR007087Zinc finger, C2H2
PROSITE patternPS000280124144IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.221152179IPR007087Zinc finger, C2H2
SMARTSM003550.078152174IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.99E-6153174No hitNo description
PfamPF139129.7E-5154176IPR007087Zinc finger, C2H2
PROSITE patternPS000280154174IPR007087Zinc finger, C2H2
SuperFamilySSF576672.99E-6441468No hitNo description
PfamPF139121.1E-8446468IPR007087Zinc finger, C2H2
PROSITE profilePS501578.787446468IPR007087Zinc finger, C2H2
SMARTSM003553446468IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280448468IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 517 aa     Download sequence    Send to blast
MGEVQEQRYR CNICSKFCVN GKSLGGHMRV HMALFSASRK SAESKAEGTE DFEGGDDQNG  60
FQIPESVENQ SNIAEICVEK IQNCDSMGLG DGDKNNSYEL RDNPKKSWRI SDSKNGVSIK  120
AASCGACGKT FSSLRALSGH MRCHSVKNSG FNLCKKCGKE FDSPRALFGH MKCHSKKHKN  180
YSAESASELD LCPIRRKLRI RYNKTDAKPS VLGLNASKSA FSEFGEFEEV AMCLIMLSEG  240
VKEWDMLNPV TESPDDDSAC FGSQSSGKSM RVSGNDGDFR SKGKMDIGIQ EKNLAEVDEM  300
KVNIAASSDG LPREYEYKEL EQFNGAGSEF LKLNSSKRPS LCVDSSSVEK DSADTDLEIL  360
NETEKKRGSK CTLYVKNFRS QLALRGDNAR QSKRGNNSSL DLHTSLSSVT VVGSQLDQIK  420
RNANQPCQGK AEKGSINTES SKRKERECPI CFKVFSSGKA LGGHKRAHFS GCTGNKLEDT  480
SVNPAIIENH GFPDLNFPAT IDEGIKGGDV GLSSCGE
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV45628.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020554652.11e-146uncharacterized protein LOC105177311
TrEMBLA0A2Z7CFB60.0A0A2Z7CFB6_9LAMI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA69272231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.12e-16C2H2-like zinc finger protein