PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV45610.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family MIKC_MADS
Protein Properties Length: 423aa    MW: 47627.3 Da    PI: 9.795
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV45610.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF90.96.3e-29959151
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                krienk+ rqvtfskRr g+lKKA+E+SvLCdaeva+i+fss+gkl+eys+
  KZV45610.1  9 KRIENKISRQVTFSKRRSGLLKKANEISVLCDAEVALIVFSSKGKLFEYST 59
                79***********************************************96 PP
2K-box738.6e-25841681195
       K-box  11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 
                 ++ +e+++ e+ kL +++e Lqr+  +++Ge L++L+++eL++LeqqL+++lk+iR+kK++ l +q + l+kk +e ++++ka  
  KZV45610.1  84 TQPEENWSAEYPKLVARVELLQRNMSNYMGEALDPLTFRELRSLEQQLDNALKRIRTKKERSLQDQNNLLKKKLREREKREKAVA 168
                 45579**********************************************************************9999887765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.071161IPR002100Transcription factor, MADS-box
SMARTSM004321.7E-39160IPR002100Transcription factor, MADS-box
CDDcd002653.72E-38277No hitNo description
SuperFamilySSF554551.15E-32290IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004047.9E-30323IPR002100Transcription factor, MADS-box
PfamPF003195.7E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004047.9E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004047.9E-303859IPR002100Transcription factor, MADS-box
PfamPF014862.1E-1886165IPR002487Transcription factor, K-box
PROSITE profilePS5129712.87587176IPR002487Transcription factor, K-box
Gene3DG3DSA:3.40.30.108.7E-30217416IPR012336Thioredoxin-like fold
SuperFamilySSF528336.13E-34217420IPR012336Thioredoxin-like fold
PfamPF013234.4E-33218414IPR001853DSBA-like thioredoxin domain
CDDcd030241.96E-73219416No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009817Biological Processdefense response to fungus, incompatible interaction
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0015035Molecular Functionprotein disulfide oxidoreductase activity
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MGRGRVQLKR IENKISRQVT FSKRRSGLLK KANEISVLCD AEVALIVFSS KGKLFEYSTD  60
SSMDRILDRY ERRSYADNKL STVTQPEENW SAEYPKLVAR VELLQRNMSN YMGEALDPLT  120
FRELRSLEQQ LDNALKRIRT KKERSLQDQN NLLKKKLRER EKREKAVAAE GEQDSALAPS  180
SETLMPPRDP LHIILPSLTI GSISMASVSS SSGKKLLKID ISADTVCPWC FVGKKNLDKA  240
IDLSSDSYNF EIKWHPFLLL PSAPKEGVNK RDFFRNKFGS RAVQIEARMS EVFKGLGLDY  300
DMSGLTGNSF DSHRLLYFAG QQGLDKQHKL AEELSSGYFT KGKYIGDRNF LVESAKKVGV  360
EGAAEFLEDP NNGVKEVNED LKRYSSNISG VPHFVINGKH QLSGGQPPEA FLKVFQVAAK  420
ESS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5cnw_A2e-222054211222FrnE protein
5co3_A2e-222054211222FrnE protein
5coh_A2e-222054211222FrnE protein
5cp1_A1e-222054211222FrnE protein
5e59_A2e-222054211222FrnE protein
5xwh_A2e-222054211222FrnE protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV45610.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027077271.11e-125uncharacterized protein LOC113701025 isoform X2
RefseqXP_027077273.11e-125uncharacterized protein LOC113701025 isoform X2
RefseqXP_027153029.11e-125uncharacterized protein LOC113753131 isoform X2
SwissprotQ6E6S75e-73AP1_VITVI; Agamous-like MADS-box protein AP1
TrEMBLA0A2Z7CEX10.0A0A2Z7CEX1_9LAMI; Uncharacterized protein
STRINGMigut.H00587.1.p1e-123(Erythranthe guttata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.15e-65AGAMOUS-like 8
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]