PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KZV45555.1

Organism

Dorcoceras hygrometricum

Taxonomic ID

472368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras

Family

FAR1

Protein Properties

Length: 882aa MW: 99995.1 Da PI: 6.8503

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KZV45555.1	genome	CNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	51.1	4.4e-16	65	139	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 kfY+eYA+++GF++ +s++++sk +g++t+r+f Cs+ +r++ ++k C+a+l+++ + ++kw+vtk+++ H+H++ KZV45555.1 65 KFYEEYARHLGFRTHVSHTNRSKGDGRCTSREFLCSRDQSRKRASEK--------------CEAMLRIEARGQDKWVVTKFVKGHSHAV 139 6*********************************99888877666..............************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	9.4E-13	65	139	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.4E-20	277	368	IPR018289	MULE transposase domain
PROSITE profile	PS50966	11.115	555	591	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.9E-9	562	589	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	4.4E-8	566	593	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009506	Cellular Component	plasmodesma
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 882 aa Download sequence Send to blast
MDIDLIDVGD ANGGQHRAIM DDGDDDSIEG GEKNAYGHSL VQDEVGVAPE PHMGMEFCSE 60 HAARKFYEEY ARHLGFRTHV SHTNRSKGDG RCTSREFLCS RDQSRKRASE KCEAMLRIEA 120 RGQDKWVVTK FVKGHSHAVI CSSKGQSLRP QKEFNTTAKD VVEIDQSGDV TPSGMMRVSI 180 NGNNVTPEMN HGGTNMPTES NHTNKNFGIS VCAARHPCQK RSLGKASQNL LDYFKKMQAE 240 NPGFYYAIQL DEDNRVANVF WADARSRTAY NYFGDAVIVD TIYLINQYKV PIASFTGINH 300 HGQTILFGCA LLFDESEAAY VWLFKTFLAA MNDRVPVSVT TAKGRIIQAA VARVFPKARH 360 CVNRWNVLRE GHDKMAHVCI SHPNFQVDLY DCLNLTETIE EFESIWASIL DKYDLKRNDW 420 LQSIYSSRRQ WVPAYCRDFF FAAIFPHQQF QTSFFDGYVN QQTTLPLFFR QYESALENSF 480 ERELEADFDT MCSTPVLKTP SPMEKQAANL YTKRIFLKFQ EELVETFAYT ASRIDGDGDT 540 DTYRVAKFED DYKAYIVSLN IAGKTASCSC HMFEYSGILC RHILTVFTVT NILTLPSHYI 600 LKRWTRNAKD GASFDEHFEL RGQESLTKRY NNLCKEAIRY AEAGAIASET YSVAISCLRE 660 GGQKVACVKK DIAKVVRPSS QVTRVNNDEW SASTLNGDMT SLLWPRQDEI KCQFNLNNSC 720 VAGQPIIQKN VSHMTPVSFN RDESYSDSMV VLPCLKSMTW VMENKNLMTE DRIAVINLKL 780 QDYSTSPTGE SVVKFSLSNI TLEPMLRSMA YISEQLSTPA NKVAVINLKL QDSEMITCES 840 EVKFQVSRDT LGAMLRSMAY IREQLCSTVE PKQDNAAKRQ RK

Sequence ? help Back to Top

Protein Sequence Length: 882 aa Download sequence Send to blast

MDIDLIDVGD ANGGQHRAIM DDGDDDSIEG GEKNAYGHSL VQDEVGVAPE PHMGMEFCSE  60
HAARKFYEEY ARHLGFRTHV SHTNRSKGDG RCTSREFLCS RDQSRKRASE KCEAMLRIEA  120
RGQDKWVVTK FVKGHSHAVI CSSKGQSLRP QKEFNTTAKD VVEIDQSGDV TPSGMMRVSI  180
NGNNVTPEMN HGGTNMPTES NHTNKNFGIS VCAARHPCQK RSLGKASQNL LDYFKKMQAE  240
NPGFYYAIQL DEDNRVANVF WADARSRTAY NYFGDAVIVD TIYLINQYKV PIASFTGINH  300
HGQTILFGCA LLFDESEAAY VWLFKTFLAA MNDRVPVSVT TAKGRIIQAA VARVFPKARH  360
CVNRWNVLRE GHDKMAHVCI SHPNFQVDLY DCLNLTETIE EFESIWASIL DKYDLKRNDW  420
LQSIYSSRRQ WVPAYCRDFF FAAIFPHQQF QTSFFDGYVN QQTTLPLFFR QYESALENSF  480
ERELEADFDT MCSTPVLKTP SPMEKQAANL YTKRIFLKFQ EELVETFAYT ASRIDGDGDT  540
DTYRVAKFED DYKAYIVSLN IAGKTASCSC HMFEYSGILC RHILTVFTVT NILTLPSHYI  600
LKRWTRNAKD GASFDEHFEL RGQESLTKRY NNLCKEAIRY AEAGAIASET YSVAISCLRE  660
GGQKVACVKK DIAKVVRPSS QVTRVNNDEW SASTLNGDMT SLLWPRQDEI KCQFNLNNSC  720
VAGQPIIQKN VSHMTPVSFN RDESYSDSMV VLPCLKSMTW VMENKNLMTE DRIAVINLKL  780
QDYSTSPTGE SVVKFSLSNI TLEPMLRSMA YISEQLSTPA NKVAVINLKL QDSEMITCES  840
EVKFQVSRDT LGAMLRSMAY IREQLCSTVE PKQDNAAKRQ RK

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KZV45555.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022883732.1	0.0	protein FAR1-RELATED SEQUENCE 3 isoform X2
Swissprot	Q9ZVC9	0.0	FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBL	A0A2Z7CFT1	0.0	A0A2Z7CFT1_9LAMI; Uncharacterized protein
STRING	Migut.N02416.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA435	22	109

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27110.2	0.0	FAR1-related sequence 3

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]