PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KZV45433.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
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Family | GRAS | ||||||||
Protein Properties | Length: 216aa MW: 24986.7 Da PI: 4.227 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 113.5 | 2.7e-35 | 1 | 198 | 172 | 374 |
GRAS 172 lgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfds 270 +g+p+ +++ v+++++d++ +++++++E++ V ++ l + l + sl++ ++k++k+l P ++vv e ea +++ +F +rf +l y +++fd+ KZV45433.1 1 MGLPLLYKP-VVSEFKDVREASFDLETDEVVTVYASVCLWTQLVTPSSLND----FMKCIKELDPSLMVVNEYEACTDTLNFIDRFYGSLIYAMTVFDC 94 689999***.7999***********************99999977777777....******************************************** PP GRAS 271 leaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLv 368 le+ l + + +E++ l+ i+n++++e +er+ h + Wr+ + e+ + +++ls+ qaklll+ + ++ +++ e ++l+ gWk+ pL KZV45433.1 95 LENCLKGDPLYWKIIEEF-LRGVIRNIITAEDEERIYWHAKIDFWRNLFAEFDMMEMELSDVCKYQAKLLLKSNSsWNNCTLDMEGKCLIVGWKGTPLQ 192 ****98888888899988.9*******************************************************8899******************** PP GRAS 369 svSaWr 374 s+SaW+ KZV45433.1 193 SISAWK 198 *****8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 13.316 | 1 | 177 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 9.4E-33 | 1 | 198 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence Send to blast |
MGLPLLYKPV VSEFKDVREA SFDLETDEVV TVYASVCLWT QLVTPSSLND FMKCIKELDP 60 SLMVVNEYEA CTDTLNFIDR FYGSLIYAMT VFDCLENCLK GDPLYWKIIE EFLRGVIRNI 120 ITAEDEERIY WHAKIDFWRN LFAEFDMMEM ELSDVCKYQA KLLLKSNSSW NNCTLDMEGK 180 CLIVGWKGTP LQSISAWKIN QIGNSEQQDD SPTVKS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 1e-12 | 1 | 198 | 174 | 375 | GRAS family transcription factor containing protein, expressed |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KZV45433.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011071651.1 | 9e-81 | DELLA protein RGL1-like | ||||
TrEMBL | A0A2Z7CFG1 | 1e-159 | A0A2Z7CFG1_9LAMI; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4694 | 18 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66350.1 | 5e-25 | RGA-like 1 |