PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KZV44452.1

Organism

Dorcoceras hygrometricum

Taxonomic ID

472368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras

Family

SRS

Protein Properties

Length: 511aa MW: 55755.1 Da PI: 7.536

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KZV44452.1	genome	CNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	165.5	2.9e-51	147	284	3	135
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrel.kskkqsalsstklssaeskkel 100 +g+++CqdCGnqakkdC h+RCRtCCksrg+dC thv+stWv+a++rrerq + ++ + a +s++++ +k++r +s++++++s+t++s++++++++ KZV44452.1 147 MGATTCQDCGNQAKKDCIHRRCRTCCKSRGYDCVTHVRSTWVSASRRRERQVARENIPA-AGSSQSTSGAKKPRLAgTSQTTTTASHTSTSNTTPPRSF 244 6889********************************************988877654.4455667777777776467778888999********* PP DUF702 101 etss.....lPeevsseavfrcvrvssvddgeeelaYqta 135 +tss lP +v+++avf+cvrv+++ddge+e+aYq++ KZV44452.1 245 DTSSshqdsLPGQVRAPAVFKCVRVTALDDGEDEYAYQAV 284 99999999****************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	5.0E-45	149	284	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	5.5E-26	151	193	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	8.6E-15	254	284	IPR006511	Lateral Root Primordium type 1, C-terminal
Gene3D	G3DSA:3.30.40.10	5.2E-11	304	375	IPR013083	Zinc finger, RING/FYVE/PHD-type
CDD	cd00162	1.24E-6	311	358	No hit	No description
SuperFamily	SSF57850	7.95E-12	311	361	No hit	No description
Pfam	PF13639	1.1E-8	311	355	IPR001841	Zinc finger, RING-type
PROSITE profile	PS50089	12.357	312	355	IPR001841	Zinc finger, RING-type
SMART	SM00184	1.2E-5	312	354	IPR001841	Zinc finger, RING-type
PROSITE pattern	PS00518	0	330	339	IPR017907	Zinc finger, RING-type, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 511 aa Download sequence Send to blast
MWSSAASTRL NCGLPPEFFF VAPASSFQHH NPDAAAAAAA TTINFDPHSF NGSNAIGVGV 60 GVGVIPLLTA TPCLAQQNIG SGGSTDDDVL NIARSRSSGG MQLWQHQQSQ NSSGYTSKKP 120 MILDHTSLLQ SGTGGSTGCG IGGSSSMGAT TCQDCGNQAK KDCIHRRCRT CCKSRGYDCV 180 THVRSTWVSA SRRRERQVAR ENIPAAGSSQ STSGAKKPRL AGTSQTTTTA SHTSTSNTTP 240 PRSFDTSSSH QDSLPGQVRA PAVFKCVRVT ALDDGEDEYA YQAVTGSCTE AEIDLVLCET 300 NSMDRCYHNG DCSICLNNIV LQETALVKGC EHAYCVTCIL RWASYKKEPT CPQCKIPFEF 360 LNIHRKLDGS INDFMFEESV CLLLRAPWFN PLVVLEREEV DDEIDDYYYE DEEEDLDDVY 420 FSSSSSLRIG NRRWGDNGFV RSGRQEARPV YHPNVDNAGA GSSRQPKKKE KKETAPKEIV 480 GRRAKRALKR ESADKAAAEK HQQHLIRLGR K

Sequence ? help Back to Top

Protein Sequence Length: 511 aa Download sequence Send to blast

MWSSAASTRL NCGLPPEFFF VAPASSFQHH NPDAAAAAAA TTINFDPHSF NGSNAIGVGV  60
GVGVIPLLTA TPCLAQQNIG SGGSTDDDVL NIARSRSSGG MQLWQHQQSQ NSSGYTSKKP  120
MILDHTSLLQ SGTGGSTGCG IGGSSSMGAT TCQDCGNQAK KDCIHRRCRT CCKSRGYDCV  180
THVRSTWVSA SRRRERQVAR ENIPAAGSSQ STSGAKKPRL AGTSQTTTTA SHTSTSNTTP  240
PRSFDTSSSH QDSLPGQVRA PAVFKCVRVT ALDDGEDEYA YQAVTGSCTE AEIDLVLCET  300
NSMDRCYHNG DCSICLNNIV LQETALVKGC EHAYCVTCIL RWASYKKEPT CPQCKIPFEF  360
LNIHRKLDGS INDFMFEESV CLLLRAPWFN PLVVLEREEV DDEIDDYYYE DEEEDLDDVY  420
FSSSSSLRIG NRRWGDNGFV RSGRQEARPV YHPNVDNAGA GSSRQPKKKE KKETAPKEIV  480
GRRAKRALKR ESADKAAAEK HQQHLIRLGR K

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18835563}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KZV44452.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269\|PubMed:18835563}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020552557.1	1e-122	protein LATERAL ROOT PRIMORDIUM 1-like
Swissprot	Q94CK9	3e-51	LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBL	A0A2Z7CBS1	0.0	A0A2Z7CBS1_9LAMI; Uncharacterized protein
STRING	Migut.N02371.1.p	1e-104	(Erythranthe guttata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12330.4	3e-45	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]