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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | KZV44107.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
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| Family | ARF | ||||||||
| Protein Properties | Length: 917aa MW: 101781 Da PI: 5.2142 | ||||||||
| Description | ARF family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | B3 | 75.1 | 7.9e-24 | 146 | 247 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93
f+k+lt sd++++g +++p++ ae+ + ++ +++l+++d++ ++W++++iyr++++r++lt+GW+ Fv a++L++gD v+F ++++ +l+
KZV44107.1 146 FCKTLTASDTSTHGGFSVPRRAAEKLfpqldySVQP-PTQELVVRDLHENTWTFRHIYRGQPKRHLLTTGWSMFVGAKRLRAGDAVLFI--RDEKSQLL 241
99*********************999****974343.3459************************************************..45677789 PP
EEEE-S CS
B3 94 vkvfrk 99
++v+r
KZV44107.1 242 LGVRRV 247
999985 PP
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| 2 | Auxin_resp | 121.1 | 8.3e-40 | 272 | 355 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83
aahaa+++++F+++YnPra++seFvv+++k++kal+ +++s+GmRf m+feteds++rr++Gt++g+sdldp+rWpnSkWrsL+
KZV44107.1 272 AAHAAANRTPFTIFYNPRACPSEFVVPLAKYRKALYgTQLSIGMRFGMMFETEDSNKRRYMGTITGISDLDPLRWPNSKWRSLQ 355
79**********************************9*********************************************97 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF101936 | 2.75E-46 | 132 | 275 | IPR015300 | DNA-binding pseudobarrel domain |
| Gene3D | G3DSA:2.40.330.10 | 1.8E-40 | 137 | 260 | IPR015300 | DNA-binding pseudobarrel domain |
| CDD | cd10017 | 1.14E-21 | 145 | 246 | No hit | No description |
| Pfam | PF02362 | 3.3E-21 | 146 | 247 | IPR003340 | B3 DNA binding domain |
| SMART | SM01019 | 4.8E-23 | 146 | 248 | IPR003340 | B3 DNA binding domain |
| PROSITE profile | PS50863 | 12.774 | 146 | 248 | IPR003340 | B3 DNA binding domain |
| Pfam | PF06507 | 1.3E-34 | 272 | 355 | IPR010525 | Auxin response factor |
| PROSITE profile | PS51745 | 20.853 | 784 | 868 | IPR000270 | PB1 domain |
| SuperFamily | SSF54277 | 2.62E-6 | 798 | 852 | No hit | No description |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0009733 | Biological Process | response to auxin | ||||
| GO:0009908 | Biological Process | flower development | ||||
| GO:0009942 | Biological Process | longitudinal axis specification | ||||
| GO:0010305 | Biological Process | leaf vascular tissue pattern formation | ||||
| GO:0048364 | Biological Process | root development | ||||
| GO:0048507 | Biological Process | meristem development | ||||
| GO:0005634 | Cellular Component | nucleus | ||||
| GO:0016020 | Cellular Component | membrane | ||||
| GO:0042802 | Molecular Function | identical protein binding | ||||
| GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 917 aa Download sequence Send to blast |
MASVEEKFKP EGLVNGGLNI LEGMRLLKEM QDQTGVKKPM NSELWHACAG PLVNLPQVGS 60 LVYYFPQGHS EQVAASTNRS ATTQIPSYPN LPSHLLCQVH NVTLHADKDT DEIYAQMSLQ 120 PVNSEKDVFP IPDFRVKPSK HPAEFFCKTL TASDTSTHGG FSVPRRAAEK LFPQLDYSVQ 180 PPTQELVVRD LHENTWTFRH IYRGQPKRHL LTTGWSMFVG AKRLRAGDAV LFIRDEKSQL 240 LLGVRRVNRQ QAALPSSVLS ADSMHIGVLA AAAHAAANRT PFTIFYNPRA CPSEFVVPLA 300 KYRKALYGTQ LSIGMRFGMM FETEDSNKRR YMGTITGISD LDPLRWPNSK WRSLQVEWDE 360 PGCCDKQSRV SPWEIETPES LFIFPSLTGN LKRPFLSAFL GAQTEWEALI NRPLFHSPLG 420 DLQCPLVSSL WSDQLTKMVV KDAALQESKS LVQPANKLTP PQIIPPDMES YPDRLVGSQK 480 NIMNSNGLLP AIPEAPEKVV HQTSMDTVGP ELATDQLSQV QSQEQCYDNK NDIPVMNQSN 540 GMQLSPAIGQ SRLDSEIFQT PQSDPTHVQS NNLNALFQYP SQVEFNQYPS ICPSPSGMFR 600 NLGYSSVFKK SVQPSPLPET VSKLPPLGQE SWDFHFNNAK CISQTSLPTL LPHQEMGALQ 660 YNSCGLKDLS DESQNQSDIY SCLNLGENNN GSSVIGPVSG TILDDICALK NTDFQNPSDY 720 LVGNFCPNQD GQSQITSASL ADSQTFSLQE YADNSGGASS SNVDFDDRTL LQHGSWQQVT 780 PRFRTYTKIQ KVGSVGRSID VSSFKTYDEL RSEIEHMFGL KGLLNDMASG WKLVYVDFEN 840 DVLLVGDDPW EADNFLDIKC CIDSCREFVG CVKCIRILSP SEVQQMGEEG MQLLNSARVQ 900 AVNGSVSEDG CDKNGSN |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 4ldu_A | 0.0 | 1 | 380 | 5 | 392 | Auxin response factor 5 |
| Search in ModeBase | ||||||
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Mediates embryo axis formation and vascular tissues differentiation. Functionally redundant with ARF7. May be necessary to counteract AMP1 activity. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:14973283, ECO:0000269|PubMed:17553903}. | |||||
| Binding Motif ? help Back to Top | |||
|---|---|---|---|
| Motif ID | Method | Source | Motif file |
| MP00153 | DAP | Transfer from AT1G19850 | Download |
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| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | KZV44107.1 |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | Retrieve | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_011083507.1 | 0.0 | auxin response factor 5 | ||||
| Swissprot | P93024 | 0.0 | ARFE_ARATH; Auxin response factor 5 | ||||
| TrEMBL | A0A2Z7CE26 | 0.0 | A0A2Z7CE26_9LAMI; Auxin response factor | ||||
| STRING | XP_009778804.1 | 0.0 | (Nicotiana sylvestris) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Asterids | OGEA5859 | 23 | 34 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G19850.1 | 0.0 | ARF family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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