PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV43380.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family C2H2
Protein Properties Length: 519aa    MW: 56800.8 Da    PI: 8.2783
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV43380.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.70.00038931123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                y C++C+ks+ +  +L  H+r H
  KZV43380.1  9 YICKICSKSCVSGKSLGGHMRIH 31
                89*******************99 PP
2zf-C2H2140.00015154176123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++C  Cgk Fs+   +  H+++H
  KZV43380.1 154 HQCATCGKAFSSIRAMFGHMKSH 176
                 79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.27E-5533No hitNo description
Gene3DG3DSA:3.30.160.606.8E-4531IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139122.6E-6833IPR007087Zinc finger, C2H2
PROSITE profilePS501579.245936IPR007087Zinc finger, C2H2
SMARTSM003550.015931IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002801131IPR007087Zinc finger, C2H2
SuperFamilySSF576677.99E-8124176No hitNo description
SMARTSM003550.45124146IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.411124151IPR007087Zinc finger, C2H2
PROSITE patternPS000280125146IPR007087Zinc finger, C2H2
PfamPF139123.6E-4125147IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.3E-4139178IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0055154176IPR015880Zinc finger, C2H2-like
PfamPF139123.8E-7154178IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.803154181IPR007087Zinc finger, C2H2
PROSITE patternPS000280156176IPR007087Zinc finger, C2H2
SuperFamilySSF576678.46E-5431458No hitNo description
PROSITE profilePS501579.64435457IPR007087Zinc finger, C2H2
SMARTSM003554.8435457IPR015880Zinc finger, C2H2-like
PfamPF139126.0E-8435459IPR007087Zinc finger, C2H2
PROSITE patternPS000280437458IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 519 aa     Download sequence    Send to blast
MEESQERRYI CKICSKSCVS GKSLGGHMRI HLAQISASKK AVELEVAIGV DSESGLVQND  60
GFQLEKPSND QLNSTFPSVE DIKNRHSNTD YEESDLSNSY ELRENPKKSW RISNPKCGIS  120
RKAACCKLCH KRFPSVRALS GHMRFHSTKS KGLHQCATCG KAFSSIRAMF GHMKSHSKKL  180
SRARGESSDN DSVDLGNLCP VRKKRSRVRY KIEESPLVSS SNASPSVVFE FGEEDAAVCL  240
LMLSIGVTES TYNDSAYFGA GSFSKSREIN GSDENFVCAG VKISNVSECD GLGSIKTPKM  300
LEGSSVPIKL AESDKDQIIE GGIQETDSEP LKSLPCKEAR LSVHDMEKNS PQNGASNLEI  360
AKDSEKKNAS RQKMLDKNSK SHHAIASHRA SHRVPKNSSS VDKIAGQLSV NGDPMKHDDK  420
VECIGIRLEQ GTKDYQCSTC FKLFGSGRAL GGHKRAHHSV FAESKTEEST AQNQQCGIVN  480
NFLDLNVPLT ADEGSNGHAG LNLWRVDRGR ELEALVLTN
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV43380.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020554652.15e-86uncharacterized protein LOC105177311
TrEMBLA0A2Z7CFE30.0A0A2Z7CFE3_9LAMI; Uncharacterized protein
STRINGMigut.H00643.1.p1e-56(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA69272231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.15e-11C2H2-like zinc finger protein