PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KZV42390.1

Organism

Dorcoceras hygrometricum

Taxonomic ID

472368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras

Family

C2H2

Protein Properties

Length: 515aa MW: 53790.8 Da PI: 8.3912

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KZV42390.1	genome	CNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.6	2.2e-05	53	75	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H KZV42390.1 53 FVCEICSKGFQRDQNLQLHRRGH 75 89*******************88 PP
2	zf-C2H2	13.9	0.00016	129	151	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H++ + KZV42390.1 129 WKCDKCSKKYAVQSDWKAHLKIC 151 58******************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	4.16E-7	52	75	No hit	No description
Gene3D	G3DSA:3.30.160.60	6.2E-5	52	75	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	10.887	53	75	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.036	53	75	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	55	75	IPR007087	Zinc finger, C2H2
SMART	SM00355	170	94	124	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	6.2E-5	117	150	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	4.16E-7	124	149	No hit	No description
SMART	SM00355	85	129	149	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009937	Biological Process	regulation of gibberellic acid mediated signaling pathway
GO:0010029	Biological Process	regulation of seed germination
GO:0010431	Biological Process	seed maturation
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 515 aa Download sequence Send to blast
MNDSTLSVDS SSGNQTAGPP KPASKKRNLP GMPDPDAEVI ALSPKTLLAT NRFVCEICSK 60 GFQRDQNLQL HRRGHNLPWK LKQRSGKEIK KRVYVCPEPS CVHHDPTRAL GDLTGIKKHY 120 CRKHGEKKWK CDKCSKKYAV QSDWKAHLKI CGTREYKCDC GTLFSRRDSF ITHRAFCDAL 180 AEESTKVHAV AAAPCADEDP KVDVLTQTAA PHPPSPPPPP IPPPPPPPAT APQAPALTRV 240 STDVTASVVP VRTPDLLEST SPNPTITPIF EESPPLINLT TSCSSGGSSS SSSNGSSSSK 300 VFASLFASST STATLQSQTV GFTHLFRAIS HPDHVPGITQ PSSSEPVSLC LAMNQGSSIF 360 GTAGQERRQY APAPQPAMSA TALLQKAAQM GATASNASLL RGLGIVSSSA PHAGLQEWSG 420 QRIEPDGTSL AAGLGLGLAC DGGSGLKELM LGAPSVFGPK HPTLDLLGLG VAANGGSSGG 480 LSALMTSING GLDVTGSPPP FYGGEYGGED IGRSS

Sequence ? help Back to Top

Protein Sequence Length: 515 aa Download sequence Send to blast

MNDSTLSVDS SSGNQTAGPP KPASKKRNLP GMPDPDAEVI ALSPKTLLAT NRFVCEICSK  60
GFQRDQNLQL HRRGHNLPWK LKQRSGKEIK KRVYVCPEPS CVHHDPTRAL GDLTGIKKHY  120
CRKHGEKKWK CDKCSKKYAV QSDWKAHLKI CGTREYKCDC GTLFSRRDSF ITHRAFCDAL  180
AEESTKVHAV AAAPCADEDP KVDVLTQTAA PHPPSPPPPP IPPPPPPPAT APQAPALTRV  240
STDVTASVVP VRTPDLLEST SPNPTITPIF EESPPLINLT TSCSSGGSSS SSSNGSSSSK  300
VFASLFASST STATLQSQTV GFTHLFRAIS HPDHVPGITQ PSSSEPVSLC LAMNQGSSIF  360
GTAGQERRQY APAPQPAMSA TALLQKAAQM GATASNASLL RGLGIVSSSA PHAGLQEWSG  420
QRIEPDGTSL AAGLGLGLAC DGGSGLKELM LGAPSVFGPK HPTLDLLGLG VAANGGSSGG  480
LSALMTSING GLDVTGSPPP FYGGEYGGED IGRSS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	2e-34	125	191	3	69	Zinc finger protein JACKDAW
5b3h_F	2e-34	125	191	3	69	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269\|PubMed:21571950, ECO:0000269\|PubMed:25035403}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00592	DAP	Transfer from AT5G66730	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KZV42390.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011099580.1	0.0	protein indeterminate-domain 2-like
Swissprot	Q9LVQ7	1e-165	IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBL	A0A2Z7CCG6	0.0	A0A2Z7CCG6_9LAMI; Zinc finger protein NUTCRACKER
STRING	VIT_04s0023g01430.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA103	24	350

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66730.1	1e-106	C2H2-like zinc finger protein

Publications ? help Back to Top
Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]