PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV41509.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family B3
Protein Properties Length: 498aa    MW: 56144.7 Da    PI: 7.5467
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV41509.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.93.9e-18137227199
                 EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                 f+kvl++s+v++  ++ lp +f++ h ++ +e+ t+ le+e+g+ + +k+i  k++    l++GW++Fv  n+L egD+++F+l+g  +f  +v ++r+
  KZV41509.1 137 FLKVLVRSHVGSCFWMGLPVPFCKIH-LP-AEDATVNLENETGEGFGMKYIAHKTG----LSAGWRKFVAGNKLVEGDVLIFQLIGPCRF--KVYIIRA 227
                 89*********************655.55.5778****************655555....**************************8888..8888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.18E-22131228IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.4E-20133228IPR015300DNA-binding pseudobarrel domain
CDDcd100174.40E-22135226No hitNo description
PfamPF023628.1E-16137227IPR003340B3 DNA binding domain
PROSITE profilePS5086312.703137228IPR003340B3 DNA binding domain
SMARTSM010192.4E-20137228IPR003340B3 DNA binding domain
PfamPF052661.9E-7370477IPR007930Protein of unknown function DUF724
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 498 aa     Download sequence    Send to blast
MRLKIVHQNQ ENLGREEVVM KKEPVETGDQ MEETQMNPEP KEESLKENST VLEASPISAA  60
CPVLVSGKRK RKPKEQLIDE FPLLVSSKKK KKRHIPRSKF GTPDDGGTLM RSVPFKSPTM  120
IRAEEVQLSL GGDHPSFLKV LVRSHVGSCF WMGLPVPFCK IHLPAEDATV NLENETGEGF  180
GMKYIAHKTG LSAGWRKFVA GNKLVEGDVL IFQLIGPCRF KVYIIRANDL TEVDGALSLL  240
TLESQTKQSD AEEKLDAQGK KKRRPKSLPL VVFQKSIQKG GSSVPPVGQP EEHSGVDSDE  300
VGSEVLEDFK FSGFALRFKD VKSFEEFHIM INGVCIDPEL PENIRRKYYE LCCSKNMFLH  360
DHLLPGLSSK LAAGMIFEVV NTADAIRVCK LTTPKKEFEV WEKSLKSFEL LGLKVGFIRA  420
RLHRLQSLSF GSEDAFETKR YLDAKTERSR VEVEIRNLEE KLVELEELSA KYGVEIENLK  480
TKAESYAMNF QDEANAKW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16991KRKPKEQLIDEFPLLVSSKKKKK
2259263KKKRR
3259264KKKRRP
4260265KKRRPK
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV41509.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011099150.10.0B3 domain-containing protein Os01g0234100
TrEMBLA0A2Z7C4S10.0A0A2Z7C4S1_9LAMI; Uncharacterized protein
STRINGMigut.H00442.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA72042328
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.11e-33B3 family protein