PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV40912.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family ARF
Protein Properties Length: 545aa    MW: 60018.3 Da    PI: 6.5624
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV40912.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B379.53.5e-25111213199
                 EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                 f k+ltpsd+++ g +++p+ +ae++         ++ +   lt++d++++ We+++iyr++++r++lt+GW++Fv+a++L +gD+ vF++++ s+ el
  KZV40912.1 111 FAKILTPSDANNGGGFSVPRYCAESIfppldfeADPPVQ--NLTMRDTNNNAWEFRHIYRGTPRRHLLTTGWSKFVNAKRLVAGDSAVFMRKE-STDEL 206
                 89*****************************96555555..6************************************************655.88889 PP

                 EEEEE-S CS
          B3  93 vvkvfrk 99 
                 +++v+r+
  KZV40912.1 207 FIGVRRA 213
                 ****996 PP
2Auxin_resp85.31.2e-28240322283
  Auxin_resp   2 ahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                 +++a ++ +FevvY+Pra+ ++Fvv++e+ve+al++ +++Gm++kma+e+edss++++ +G +++   ld   W++S+Wr+L+
  KZV40912.1 240 MENAVKGIAFEVVYYPRAGLPDFVVSAERVEDALRICWTPGMQVKMAVESEDSSRISWyQGAITAAASLDAGPWSRSPWRMLQ 322
                 667788999************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.62E-31107226IPR015300DNA-binding pseudobarrel domain
PfamPF023621.2E-22111213IPR003340B3 DNA binding domain
SMARTSM010194.2E-19111214IPR003340B3 DNA binding domain
PROSITE profilePS5086312.59111214IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.3E-32111215IPR015300DNA-binding pseudobarrel domain
CDDcd100171.37E-21111212No hitNo description
PfamPF065075.2E-25240322IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0010208Biological Processpollen wall assembly
GO:0048830Biological Processadventitious root development
GO:0052543Biological Processcallose deposition in cell wall
GO:0005634Cellular Componentnucleus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 545 aa     Download sequence    Send to blast
MSNLSTATEV DAGVWRAIAG ASVQIPSTHS YVYYFPEGHI EHSPSPAIVN SNTPLKRPLI  60
LCQVLSVRLL SSNISDQVFA KILLQPLHPH VQREENRDGN GDDLQNVVVP FAKILTPSDA  120
NNGGGFSVPR YCAESIFPPL DFEADPPVQN LTMRDTNNNA WEFRHIYRGT PRRHLLTTGW  180
SKFVNAKRLV AGDSAVFMRK ESTDELFIGV RRAVRLGTKN AWTTAETAAN GSKDEVMEAM  240
ENAVKGIAFE VVYYPRAGLP DFVVSAERVE DALRICWTPG MQVKMAVESE DSSRISWYQG  300
AITAAASLDA GPWSRSPWRM LQVTWDEAQP LQNMNRLNPW QIEYVLPLPQ FHSPFPHHKK  360
LKVLQHHGKL PDEEENCYVP MNDITNATAE NLNLSMFNNS SFPGSMQGAR RDRCSISSLS  420
NSESDNSLQT FTNLLTNGAG SKSKHVSAAL KTKNSPLDNL SSSSQNSDQF CGIGSSGQQG  480
HPPSSPIGGH SFQLFGKLIQ IPKPVECGLI NEDCCTDGGY QENSIISNQP NSSPNQNSNG  540
LLVRL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A5e-661034351388Auxin response factor 5
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV40912.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020547741.10.0auxin response factor 17
TrEMBLA0A2Z7C2580.0A0A2Z7C258_9LAMI; Auxin response factor
STRINGMigut.N03328.1.p1e-166(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA95601924
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.11e-130auxin response factor 17