PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KZV40888.1

Organism

Dorcoceras hygrometricum

Taxonomic ID

472368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras

Family

TCP

Protein Properties

Length: 387aa MW: 41210.7 Da PI: 7.1607

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KZV40888.1	genome	CNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	125.3	6.7e-39	94	197	5	89
TCP 5 kdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.............. 88 k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLl qa+pai+++tgt++++a+++ ++s +ss+ + s++ KZV40888.1 94 KKPSKDRHTKVDGRGRRIRMPALCAARVFQLTKELGHKSDGETIEWLLHQAEPAIIAATGTGTIPANFStLNVSLRSSGTTISAPqsksaplfiggapg 192 899***************************************************************999877777777764443333344566666666 PP TCP 89 ....k 89 + KZV40888.1 193 mlgfH 197 55541 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	27.319	97	151	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	7.6E-37	97	203	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 387 aa Download sequence Send to blast
MEYTRSQGNS DHHESVSSLQ LISHHQSQPQ PGSDPATSHG PGPFRMGSIS MQQSRSLTPS 60 VSTPTATTNP LSTSIVCTEN DSNNDNPAAG KAVKKPSKDR HTKVDGRGRR IRMPALCAAR 120 VFQLTKELGH KSDGETIEWL LHQAEPAIIA ATGTGTIPAN FSTLNVSLRS SGTTISAPQS 180 KSAPLFIGGA PGMLGFHPQL TSSSSFGQDP DENNFMKKRF REGSSCAASP KPGRAGFQDQ 240 EPVSDPKPGL NHTSNYISAP AMWAVAPAAV GNVGNAFWML PMSGGGSTAQ VGQPEWQYKA 300 PSMQRIGGFE FPGASRFNQV QIGSMVLQQP PAVQHLGLGV TETNMGMLAS INSFSDSNNT 360 RIDLAMNLDQ NQTQNSDSDD ENHKDSQ

Sequence ? help Back to Top

Protein Sequence Length: 387 aa Download sequence Send to blast

MEYTRSQGNS DHHESVSSLQ LISHHQSQPQ PGSDPATSHG PGPFRMGSIS MQQSRSLTPS  60
VSTPTATTNP LSTSIVCTEN DSNNDNPAAG KAVKKPSKDR HTKVDGRGRR IRMPALCAAR  120
VFQLTKELGH KSDGETIEWL LHQAEPAIIA ATGTGTIPAN FSTLNVSLRS SGTTISAPQS  180
KSAPLFIGGA PGMLGFHPQL TSSSSFGQDP DENNFMKKRF REGSSCAASP KPGRAGFQDQ  240
EPVSDPKPGL NHTSNYISAP AMWAVAPAAV GNVGNAFWML PMSGGGSTAQ VGQPEWQYKA  300
PSMQRIGGFE FPGASRFNQV QIGSMVLQQP PAVQHLGLGV TETNMGMLAS INSFSDSNNT  360
RIDLAMNLDQ NQTQNSDSDD ENHKDSQ

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KZV40888.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011096575.1	1e-155	LOW QUALITY PROTEIN: transcription factor TCP23
Swissprot	Q9LQF0	6e-68	TCP23_ARATH; Transcription factor TCP23
TrEMBL	A0A2Z7C982	0.0	A0A2Z7C982_9LAMI; Uncharacterized protein
STRING	XP_009775051.1	1e-150	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA248	24	201

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G35560.1	7e-62	TCP family protein