PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV40837.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family NAC
Protein Properties Length: 372aa    MW: 42658.5 Da    PI: 6.509
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV40837.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM170.55.2e-53211501129
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kge 98 
                 lppGfrFhPtdeel+++yL+ kv +  l +   i evd++++ePw+Lp  +k +e+ewyfFs rd+ky+tg r+nrat +gyWkatgkd+ev+s+ +g+
  KZV40837.1  21 LPPGFRFHPTDEELITFYLASKVFNGALICGVEIVEVDLNRCEPWELPDLAKMGEREWYFFSLRDRKYPTGLRTNRATGAGYWKATGKDREVYSAsNGA 119
                 79*************************888445***************8788899**************************************997889 PP

         NAM  99 lvglkktLvfykgrapkgektdWvmheyrle 129
                 l g+kktLvfy+grap+gekt+Wvmheyrle
  KZV40837.1 120 LLGMKKTLVFYTGRAPRGEKTKWVMHEYRLE 150
                 9****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.31E-6315171IPR003441NAC domain
PROSITE profilePS5100559.92721171IPR003441NAC domain
PfamPF023651.1E-2722149IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010014Biological Processmeristem initiation
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MLGMEEILRE LEREEMNEQG LPPGFRFHPT DEELITFYLA SKVFNGALIC GVEIVEVDLN  60
RCEPWELPDL AKMGEREWYF FSLRDRKYPT GLRTNRATGA GYWKATGKDR EVYSASNGAL  120
LGMKKTLVFY TGRAPRGEKT KWVMHEYRLE GHFSCRHTHK EEWVICRIFH KVGEKMTLPT  180
IFQPQNYNLT KASTACSLPP LLEPPQPNPS RSQSQDCMSS MIQILNQNQN IENPFPMHHQ  240
DSDLKSLIDP THSENDHFSF THPTPLFLPP KGQDFTFKEL SNAIANHCKK ESIFSPRFQI  300
LQPDGFAGMH WDYQEKIRDI NRSQSPFLLG FDGIYNNING GIGIPSVSAI AATADPALDH  360
VMMPTEPAFR YW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A5e-51121746171Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for axillary meristem initiation and separation of the meristem from the main stem. May act as an inhibitor of cell division. {ECO:0000269|PubMed:12837947, ECO:0000269|PubMed:17122068}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00241DAPTransfer from AT1G76420Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV40837.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By BRM, at the chromatin level, and conferring a very specific spatial expression pattern. {ECO:0000269|PubMed:16854978}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011074066.11e-146protein CUP-SHAPED COTYLEDON 3
SwissprotQ9S8514e-98NAC31_ARATH; Protein CUP-SHAPED COTYLEDON 3
TrEMBLA0A2Z7C2A00.0A0A2Z7C2A0_9LAMI; Uncharacterized protein
STRINGGorai.009G186000.11e-120(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15224279
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76420.18e-91NAC family protein
Publications ? help Back to Top
  1. Chen C, et al.
    Transcriptome profiling reveals roles of meristem regulators and polarity genes during fruit trichome development in cucumber (Cucumis sativus L.).
    J. Exp. Bot., 2014. 65(17): p. 4943-58
    [PMID:24962999]
  2. Gonçalves B, et al.
    A conserved role for CUP-SHAPED COTYLEDON genes during ovule development.
    Plant J., 2015. 83(4): p. 732-42
    [PMID:26119568]
  3. Balkunde R,Kitagawa M,Xu XM,Wang J,Jackson D
    SHOOT MERISTEMLESS trafficking controls axillary meristem formation, meristem size and organ boundaries in Arabidopsis.
    Plant J., 2017. 90(3): p. 435-446
    [PMID:28161901]
  4. Espinosa-Ruiz A, et al.
    TOPLESS mediates brassinosteroid control of shoot boundaries and root meristem development in Arabidopsis thaliana.
    Development, 2017. 144(9): p. 1619-1628
    [PMID:28320734]
  5. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]