PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KZV40729.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
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Family | B3 | ||||||||
Protein Properties | Length: 73aa MW: 8657.9 Da PI: 8.4814 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 47 | 4.6e-15 | 3 | 47 | 43 | 86 |
S-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE.E-S CS B3 43 grsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk.ldg 86 + W+++++y+ +s+++v+t+GW+ Fvk++ Lk +D+v+F+ +++ KZV40729.1 3 MKLWKFRFCYWSSSQTFVFTRGWNAFVKEKSLKPKDMVIFStYEH 47 688*************************************94333 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 10.743 | 1 | 66 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 7.61E-10 | 2 | 42 | No hit | No description |
Pfam | PF02362 | 3.1E-12 | 3 | 48 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 5.69E-13 | 3 | 48 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.1E-14 | 4 | 49 | IPR015300 | DNA-binding pseudobarrel domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 73 aa Download sequence Send to blast |
MSMKLWKFRF CYWSSSQTFV FTRGWNAFVK EKSLKPKDMV IFSTYEHSDG LDEVGRVFSL 60 DVLYNNNAEH PPI |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KZV40729.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011083994.1 | 3e-23 | AP2/ERF and B3 domain-containing transcription factor At1g50680 | ||||
Refseq | XP_011083995.1 | 3e-23 | AP2/ERF and B3 domain-containing transcription factor At1g50680 | ||||
Refseq | XP_011083998.1 | 3e-23 | AP2/ERF and B3 domain-containing transcription factor At1g50680 | ||||
Refseq | XP_011083999.1 | 3e-23 | AP2/ERF and B3 domain-containing transcription factor At1g50680 | ||||
Refseq | XP_020550901.1 | 3e-23 | AP2/ERF and B3 domain-containing transcription factor At1g50680 | ||||
Refseq | XP_020550902.1 | 3e-23 | AP2/ERF and B3 domain-containing transcription factor At1g50680 | ||||
Refseq | XP_020550903.1 | 3e-23 | AP2/ERF and B3 domain-containing transcription factor At1g50680 | ||||
Refseq | XP_020550904.1 | 3e-23 | AP2/ERF and B3 domain-containing transcription factor At1g50680 | ||||
Swissprot | Q9C688 | 1e-16 | RAVL3_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g51120 | ||||
TrEMBL | A0A2Z7A6L8 | 4e-47 | A0A2Z7A6L8_9LAMI; Uncharacterized protein | ||||
TrEMBL | A0A2Z7C2J6 | 4e-48 | A0A2Z7C2J6_9LAMI; Uncharacterized protein | ||||
STRING | GLYMA20G39140.2 | 3e-20 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5252 | 23 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51120.1 | 6e-19 | RAV family protein |