PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV39754.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family B3
Protein Properties Length: 507aa    MW: 57401.4 Da    PI: 7.3827
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV39754.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B363.43.7e-20147237199
                 EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                 f+kvl++s+v +  ++ lp +f++ h    ++++t++le+e+g+++e+k+i  k++    l++GW++Fv  n+L egD+++F+l+g+ +f  +v ++r+
  KZV39754.1 147 FLKVLVRSHVASCFWMGLPVPFCKLHLP--NKDTTVVLENETGEEFEIKYIAHKTG----LSAGWRKFVAGNKLLEGDVLIFQLIGSCRF--KVYIIRA 237
                 89*********************98853..46789***************655555....**************************8888..8888886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.9E-21140238IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.3E-23141238IPR015300DNA-binding pseudobarrel domain
CDDcd100177.17E-24145236No hitNo description
PfamPF023622.3E-17147237IPR003340B3 DNA binding domain
PROSITE profilePS5086313.704147238IPR003340B3 DNA binding domain
SMARTSM010196.2E-23147238IPR003340B3 DNA binding domain
PfamPF052665.3E-10379498IPR007930Protein of unknown function DUF724
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 507 aa     Download sequence    Send to blast
MKLIIVHQNQ ESRGVEEQVM KKESLDTDHV EDTAAPRSPE DESRKLNSPG REVSPIADSH  60
PSPPLGKRKR KRKELIGEVW TDISRSMRKK KTSVPKFEDG TPDFGGMLAS EGNASIGGSS  120
SHAQFKSPTM IRAEEVQSSL GNEQPNFLKV LVRSHVASCF WMGLPVPFCK LHLPNKDTTV  180
VLENETGEEF EIKYIAHKTG LSAGWRKFVA GNKLLEGDVL IFQLIGSCRF KVYIIRANEL  240
NEVDGALSLL ILDSQTKQSD AEGTIDAQTK KKRRPKSLPL TVVQKKKQKE SPVPRIGQPE  300
EHSANDSEEV ASEVLECSKF SGSAYHFKDV KSFQEFHIVV HGVCIDLELP EHIRRKYYDL  360
CCSKNTFLHD RLLPGLSSKL ASGMIFEAVS TADSIRGCSL TTPRNEFDVW EKSLRSFELL  420
GFKIGFLRSR LRRLVSLSFD SEDAVETRRY FDAKIKRDHA EEEIRNLETK LVGMKELVTK  480
YDVEIENLKM KAENYELKFQ EEAESPW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16672KRKRKRK
26772RKRKRK
36773RKRKRKE
47090KRKELIGEVWTDISRSMRKKK
5269273KKKRR
6269274KKKRRP
7269286KKKRRPKSLPLTVVQKKK
8270275KKRRPK
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV39754.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011099150.10.0B3 domain-containing protein Os01g0234100
TrEMBLA0A2Z7BZC10.0A0A2Z7BZC1_9LAMI; Uncharacterized protein
STRINGMigut.H00442.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA72042328
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.14e-35B3 family protein