PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KZV39602.1

Organism

Dorcoceras hygrometricum

Taxonomic ID

472368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras

Family

ARF

Protein Properties

Length: 1039aa MW: 115195 Da PI: 6.4519

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KZV39602.1	genome	CNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	75.4	6.5e-24	265	366	1	99
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 f+k+lt sd++++g +++p++ ae+ ++++++ ++l+++d++ ++W++++iyr++++r++lt+GW+ Fv a++L++gD v+F ++++ +l+ KZV39602.1 265 FCKILTASDTSTHGGFSVPRRAAEKLfpqldySMQPPT-QELIVRDLHDNTWTFRHIYRGQPKRHLLTTGWSMFVGAKRLRAGDAVLFI--RDEKSQLL 360 99*******************999*9555554.49**********************************************..45677789 PP EEEE-S CS B3 94 vkvfrk 99 ++v+r+ KZV39602.1 361 LGVRRA 366 999997 PP
2	Auxin_resp	117.3	1.3e-38	391	474	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aaha +++s F+++YnPra++seF+++++k++kal+ +++svGmRf m+fete+ss+rr++Gt+vg+sdldp+rWpnSkWrsL+ KZV39602.1 391 AAHASANRSSFSIFYNPRACPSEFIIPLAKYRKALYgTQLSVGMRFGMMFETEESSKRRYMGTIVGISDLDPLRWPNSKWRSLQ 474 799*******************************9*******************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	5.36E-47	252	394	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	1.4E-41	257	379	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	9.80E-22	264	365	No hit	No description
PROSITE profile	PS50863	13.225	265	367	IPR003340	B3 DNA binding domain
SMART	SM01019	1.8E-22	265	367	IPR003340	B3 DNA binding domain
Pfam	PF02362	2.5E-21	265	366	IPR003340	B3 DNA binding domain
Pfam	PF06507	2.1E-33	391	474	IPR010525	Auxin response factor
Pfam	PF02309	5.8E-10	917	1007	IPR033389	AUX/IAA domain
PROSITE profile	PS51745	26.447	921	1004	IPR000270	PB1 domain
SuperFamily	SSF54277	1.28E-9	934	999	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009725	Biological Process	response to hormone
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1039 aa Download sequence Send to blast
MPPKRSRAQG MGETSHMQSL SQGSENPSLT AEQIAQLVAA TVEQILANRT ESCLPPNQKA 60 EEIKKLQEEV ARHLTLPRDP LPPCPLNVEE PAHPPFVGAR VPPDESKVPL VGKFGLIGQH 120 GFPSFWTRRD TIKRLGRATY YAIARVGRSK NLLSVRKPIS SELWHACAGP LVTLPQIGSL 180 VYYLPQGHSE QVAVSTNRAA TSQIPNYPNL PSQLLCQVHN VTLHADKDTD EIYAQMNLQP 240 VSSEKDVFSV PDFGVRPSKH PTEFFCKILT ASDTSTHGGF SVPRRAAEKL FPQLDYSMQP 300 PTQELIVRDL HDNTWTFRHI YRGQPKRHLL TTGWSMFVGA KRLRAGDAVL FIRDEKSQLL 360 LGVRRANRQQ TTLPSSVLSA DSMHIGILAA AAHASANRSS FSIFYNPRAC PSEFIIPLAK 420 YRKALYGTQL SVGMRFGMMF ETEESSKRRY MGTIVGISDL DPLRWPNSKW RSLQVEWDEP 480 GCGDKPNRVS PWEVETPESI LIFPSLTANL KRPFHSAVVG VQPEWGDMLT CRPFLRVPDI 540 SPGDLQCPSI SSFWPEQLMK IKPHGLVTPL DNTPHMQDFS VKDVFQEAKS LIHPAIRKPE 600 STPPENVFPQ GYSHPQSVVT QQNIANYSIL VPGKPLSPKK LGNQTLGAGS ELSKLEPIPA 660 MDQLTSQTAV NDVMVANQIN GTLDSQTSLW TTNSRGEIDP SQVIESASAN TYLQYLGQVE 720 CDPISQSQHH AGSFRSLGPL STFEKSELHA TLSKTSYPMQ YSVDQNLWDS HFNEVKAISH 780 AQLPVLLPRQ CMPNLQYSIG GLKDISDESH NQSDIYSCLN IDGSNSGSTI IDPSVSSTLL 840 DDFCILKNAD FQNPSDYLVN NFCRNQDIQS QITTASLADS QNVTLQEYAD NSGGASSSNV 900 DFEDTNLLQH GSWQQVTTRF RTYTKIQKAG SVGRSIDVSS FKNYDELRSE IEQMFSLKGL 960 LNDSSSGWKL VYVDFENDVL LVGDDPWEEF VGCVKCIRIL SPSEVQQMGD EGMQLLNSAG 1020 VQGASALTYD TRCHKDGSN

Sequence ? help Back to Top

Protein Sequence Length: 1039 aa Download sequence Send to blast

MPPKRSRAQG MGETSHMQSL SQGSENPSLT AEQIAQLVAA TVEQILANRT ESCLPPNQKA  60
EEIKKLQEEV ARHLTLPRDP LPPCPLNVEE PAHPPFVGAR VPPDESKVPL VGKFGLIGQH  120
GFPSFWTRRD TIKRLGRATY YAIARVGRSK NLLSVRKPIS SELWHACAGP LVTLPQIGSL  180
VYYLPQGHSE QVAVSTNRAA TSQIPNYPNL PSQLLCQVHN VTLHADKDTD EIYAQMNLQP  240
VSSEKDVFSV PDFGVRPSKH PTEFFCKILT ASDTSTHGGF SVPRRAAEKL FPQLDYSMQP  300
PTQELIVRDL HDNTWTFRHI YRGQPKRHLL TTGWSMFVGA KRLRAGDAVL FIRDEKSQLL  360
LGVRRANRQQ TTLPSSVLSA DSMHIGILAA AAHASANRSS FSIFYNPRAC PSEFIIPLAK  420
YRKALYGTQL SVGMRFGMMF ETEESSKRRY MGTIVGISDL DPLRWPNSKW RSLQVEWDEP  480
GCGDKPNRVS PWEVETPESI LIFPSLTANL KRPFHSAVVG VQPEWGDMLT CRPFLRVPDI  540
SPGDLQCPSI SSFWPEQLMK IKPHGLVTPL DNTPHMQDFS VKDVFQEAKS LIHPAIRKPE  600
STPPENVFPQ GYSHPQSVVT QQNIANYSIL VPGKPLSPKK LGNQTLGAGS ELSKLEPIPA  660
MDQLTSQTAV NDVMVANQIN GTLDSQTSLW TTNSRGEIDP SQVIESASAN TYLQYLGQVE  720
CDPISQSQHH AGSFRSLGPL STFEKSELHA TLSKTSYPMQ YSVDQNLWDS HFNEVKAISH  780
AQLPVLLPRQ CMPNLQYSIG GLKDISDESH NQSDIYSCLN IDGSNSGSTI IDPSVSSTLL  840
DDFCILKNAD FQNPSDYLVN NFCRNQDIQS QITTASLADS QNVTLQEYAD NSGGASSSNV  900
DFEDTNLLQH GSWQQVTTRF RTYTKIQKAG SVGRSIDVSS FKNYDELRSE IEQMFSLKGL  960
LNDSSSGWKL VYVDFENDVL LVGDDPWEEF VGCVKCIRIL SPSEVQQMGD EGMQLLNSAG  1020
VQGASALTYD TRCHKDGSN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4ldu_A	0.0	150	499	41	392	Auxin response factor 5
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Mediates embryo axis formation and vascular tissues differentiation. Functionally redundant with ARF7. May be necessary to counteract AMP1 activity. {ECO:0000269\|PubMed:12036261, ECO:0000269\|PubMed:14973283, ECO:0000269\|PubMed:17553903}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KZV39602.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011083507.1	0.0	auxin response factor 5
Swissprot	P93024	0.0	ARFE_ARATH; Auxin response factor 5
TrEMBL	A0A2Z7BY83	0.0	A0A2Z7BY83_9LAMI; Auxin response factor
STRING	XP_009778804.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5859	23	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19850.1	0.0	ARF family protein

Publications ? help Back to Top
Chen MK,Wilson RL,Palme K,Ditengou FA,Shpak ED ERECTA family genes regulate auxin transport in the shoot apical meristem and forming leaf primordia. Plant Physiol., 2013. 162(4): p. 1978-91 [PMID:23821653] Huang JB, et al. ROP3 GTPase contributes to polar auxin transport and auxin responses and is important for embryogenesis and seedling growth in Arabidopsis. Plant Cell, 2014. 26(9): p. 3501-18 [PMID:25217509] Qi J, et al. Auxin depletion from leaf primordia contributes to organ patterning. Proc. Natl. Acad. Sci. U.S.A., 2014. 111(52): p. 18769-74 [PMID:25512543] Crawford BC, et al. Plant development. Genetic control of distal stem cell fate within root and embryonic meristems. Science, 2015. 347(6222): p. 655-9 [PMID:25612610] Zhang Y, et al. Regulation of oncogene expression in T-DNA-transformed host plant cells. PLoS Pathog., 2015. 11(1): p. e1004620 [PMID:25615824] Robert HS, et al. Plant embryogenesis requires AUX/LAX-mediated auxin influx. Development, 2015. 142(4): p. 702-11 [PMID:25617434] Krogan NT,Berleth T The identification and characterization of specific ARF-Aux/IAA regulatory modules in plant growth and development. Plant Signal Behav, 2015. 10(4): p. e992748 [PMID:25830553] Ckurshumova W,Berleth T Overcoming recalcitrance - Auxin response factor functions in plant regeneration. Plant Signal Behav, 2015. 10(7): p. e993293 [PMID:26098229] Wendrich JR, et al. A set of domain-specific markers in the Arabidopsis embryo. Plant Reprod, 2015. 28(3-4): p. 153-60 [PMID:26216537] Wu MF, et al. Auxin-regulated chromatin switch directs acquisition of flower primordium founder fate. Elife, 2015. 4: p. e09269 [PMID:26460543] Yamaguchi N,Jeong CW,Nole-Wilson S,Krizek BA,Wagner D AINTEGUMENTA and AINTEGUMENTA-LIKE6/PLETHORA3 Induce LEAFY Expression in Response to Auxin to Promote the Onset of Flower Formation in Arabidopsis. Plant Physiol., 2016. 170(1): p. 283-93 [PMID:26537561] Müller CJ, et al. PHABULOSA Mediates an Auxin Signaling Loop to Regulate Vascular Patterning in Arabidopsis. Plant Physiol., 2016. 170(2): p. 956-70 [PMID:26637548] Herud O,Weijers D,Lau S,Jürgens G Auxin responsiveness of the MONOPTEROS-BODENLOS module in primary root initiation critically depends on the nuclear import kinetics of the Aux/IAA inhibitor BODENLOS. Plant J., 2016. 85(2): p. 269-77 [PMID:26714008] Luo S, et al. Constitutive Expression of OsIAA9 Affects Starch Granules Accumulation and Root Gravitropic Response in Arabidopsis. Front Plant Sci, 2015. 6: p. 1156 [PMID:26734051] Yamaguchi N,Wu MF,Winter CM,Wagner D LEAFY and Polar Auxin Transport Coordinately Regulate Arabidopsis Flower Development. Plants (Basel), 2014. 3(2): p. 251-65 [PMID:27135503] Krogan NT,Marcos D,Weiner AI,Berleth T The auxin response factor MONOPTEROS controls meristem function and organogenesis in both the shoot and root through the direct regulation of PIN genes. New Phytol., 2016. 212(1): p. 42-50 [PMID:27441727] Fendrych M,Leung J,Friml J TIR1/AFB-Aux/IAA auxin perception mediates rapid cell wall acidification and growth of Arabidopsis hypocotyls. Elife, 2018. [PMID:27627746] Matthes M,Torres-Ruiz RA Boronic acid treatment phenocopies monopteros by affecting PIN1 membrane stability and polar auxin transport in Arabidopsis thaliana embryos. Development, 2016. 143(21): p. 4053-4062 [PMID:27697905] Bhatia N, et al. Auxin Acts through MONOPTEROS to Regulate Plant Cell Polarity and Pattern Phyllotaxis. Curr. Biol., 2016. 26(23): p. 3202-3208 [PMID:27818174] Wójcikowska B,Gaj MD Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis. Plant Cell Rep., 2017. 36(6): p. 843-858 [PMID:28255787] Möller BK, et al. Auxin response cell-autonomously controls ground tissue initiation in the early Arabidopsis embryo. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(12): p. E2533-E2539 [PMID:28265057] Carey NS,Krogan NT The role of AUXIN RESPONSE FACTORs in the development and differential growth of inflorescence stems. Plant Signal Behav, 2017. 12(4): p. e1307492 [PMID:28340328] Guan C, et al. Spatial Auxin Signaling Controls Leaf Flattening in Arabidopsis. Curr. Biol., 2017. 27(19): p. 2940-2950.e4 [PMID:28943086] Gaillochet C, et al. Control of plant cell fate transitions by transcriptional and hormonal signals. Elife, 2018. [PMID:29058667] Zheng K, et al. Involvement of PACLOBUTRAZOL RESISTANCE6/KIDARI, an Atypical bHLH Transcription Factor, in Auxin Responses in Arabidopsis. Front Plant Sci, 2017. 8: p. 1813 [PMID:29114256] Liu Z, et al. ARF2-ARF4 and ARF5 are Essential for Female and Male Gametophyte Development in Arabidopsis. Plant Cell Physiol., 2018. 59(1): p. 179-189 [PMID:29145642]