PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV39239.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family SBP
Protein Properties Length: 188aa    MW: 20734.4 Da    PI: 9.7253
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV39239.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP133.19.1e-4279155177
                 --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
         SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                 +Cq+e+C+ dls+ak yhrrh+vCe+h+ka+vvlv+g++qrfCqqCsrfhel efD++krsCrrrLa+hnerrrk+ 
  KZV39239.1  79 MCQAEKCSLDLSDAKPYHRRHRVCEHHAKAQVVLVAGIRQRFCQQCSRFHELLEFDDSKRSCRRRLAGHNERRRKNP 155
                 6**************************************************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.6E-3374141IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.58277154IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.96E-3878158IPR004333Transcription factor, SBP-box
PfamPF031101.2E-3180153IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010321Biological Processregulation of vegetative phase change
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MEASSINRIH TVDLKHRPIL KQQIMNMDGH ATQESEDDER MAGGVIDDDK KKRSAAMGGG  60
ATTKKGSIGG GGGSPIMKMC QAEKCSLDLS DAKPYHRRHR VCEHHAKAQV VLVAGIRQRF  120
CQQCSRFHEL LEFDDSKRSC RRRLAGHNER RRKNPPDHPN SNGQSIDNKD SAPAAAPSLL  180
SSSAPLLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A9e-3770153184squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional factor. Binds to the promoter of the SQUAMOSA gene.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00634PBMTransfer from PK22320.1Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV39239.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012831705.14e-55PREDICTED: squamosa promoter-binding protein 1-like
SwissprotQ387417e-39SBP1_ANTMA; Squamosa promoter-binding protein 1
TrEMBLA0A2Z7BXN51e-137A0A2Z7BXN5_9LAMI; Squamosa promoter-binding protein 1
STRINGMigut.M00166.1.p2e-57(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA74924105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15270.12e-38squamosa promoter binding protein-like 5
Publications ? help Back to Top
  1. Klein J,Saedler H,Huijser P
    A new family of DNA binding proteins includes putative transcriptional regulators of the Antirrhinum majus floral meristem identity gene SQUAMOSA.
    Mol. Gen. Genet., 1996. 250(1): p. 7-16
    [PMID:8569690]