PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KZV38553.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
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Family | FAR1 | ||||||||
Protein Properties | Length: 254aa MW: 28829.5 Da PI: 6.7227 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 89.5 | 4.6e-28 | 88 | 175 | 2 | 91 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn+YA++ GF +r+sk ++s+r+g+ + r +vC+keg+r+++k++ k r+r+etr+gC+a++ v+k +g+w+vtk+++eH+H+l+p KZV38553.1 88 FYNAYATREGFVIRVSKLSRSRRDGSAIGRALVCNKEGFRTPDKRE--KVVRQRMETRVGCRAMILVRKVGSGRWVVTKFVKEHTHPLTP 175 ******************************************9988..999************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.9E-25 | 88 | 175 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MDFEIDGEIN GEVLGSSIHF EARTDNGNVI VGSSSDEILQ QGLDKVNEES SKMELFQIED 60 LEAVNCSGPT GDPFVGLEFE SEAAAHAFYN AYATREGFVI RVSKLSRSRR DGSAIGRALV 120 CNKEGFRTPD KREKVVRQRM ETRVGCRAMI LVRKVGSGRW VVTKFVKEHT HPLTPGRGRR 180 DLICDQYPNE HDKIQELSRQ LAVEKKKVAT YKRHLEMIFE HIEEHNQSLS KKLQDIVNSV 240 NEMESKEGLG PRYY |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KZV38553.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011098324.1 | 1e-146 | protein FAR1-RELATED SEQUENCE 5 | ||||
TrEMBL | A0A2Z7BVC2 | 0.0 | A0A2Z7BVC2_9LAMI; Uncharacterized protein | ||||
STRING | Migut.H01929.1.p | 1e-136 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA11568 | 23 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G59470.2 | 2e-87 | FAR1 family protein |