PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | KZV38032.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 191aa MW: 22096.5 Da PI: 4.9382 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 110.6 | 1.8e-34 | 5 | 125 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk.dkevlskkge 98 +ppGfrFhPtdeelvv++L++k++ +++ ++i+++d++ ++PwdL+ k+ ae ++wyf+s++ ++r+t sgyW+ g d++++s++g+ KZV38032.1 5 MPPGFRFHPTDEELVVHFLHRKTKLLPCHP-DIIPDLDLHPYDPWDLNGKAMAEGSRWYFYSRKT--------QSRVTGSGYWQPFGAkDEHIYSSSGH 94 79*************************999.99**************977778899*****9974........579********998648999**9*** PP NAM 99 lvglkktLvfykg.rapkgektdWvmheyrl 128 +g++k fy g +++g+kt+Wvm+e+rl KZV38032.1 95 IIGIRKHYEFYIGeLDSNGVKTNWVMQEFRL 125 ***********8846899***********98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.18E-43 | 3 | 156 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 42.264 | 5 | 158 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.1E-22 | 6 | 125 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 191 aa Download sequence Send to blast |
MSFNMPPGFR FHPTDEELVV HFLHRKTKLL PCHPDIIPDL DLHPYDPWDL NGKAMAEGSR 60 WYFYSRKTQS RVTGSGYWQP FGAKDEHIYS SSGHIIGIRK HYEFYIGELD SNGVKTNWVM 120 QEFRLSDSSS SSTRSSRSRR NSNCVDHSKW VLCRVYEGEC DDDGDDDGIE LSCLDEVFLS 180 MDDFDEISLP N |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 1e-33 | 2 | 159 | 17 | 169 | NAC domain-containing protein 19 |
3swm_B | 1e-33 | 2 | 159 | 17 | 169 | NAC domain-containing protein 19 |
3swm_C | 1e-33 | 2 | 159 | 17 | 169 | NAC domain-containing protein 19 |
3swm_D | 1e-33 | 2 | 159 | 17 | 169 | NAC domain-containing protein 19 |
3swp_A | 1e-33 | 2 | 159 | 17 | 169 | NAC domain-containing protein 19 |
3swp_B | 1e-33 | 2 | 159 | 17 | 169 | NAC domain-containing protein 19 |
3swp_C | 1e-33 | 2 | 159 | 17 | 169 | NAC domain-containing protein 19 |
3swp_D | 1e-33 | 2 | 159 | 17 | 169 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | KZV38032.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_028116302.1 | 2e-90 | NAC domain-containing protein 104-like | ||||
Swissprot | Q8GWK6 | 6e-77 | NC104_ARATH; NAC domain-containing protein 104 | ||||
TrEMBL | A0A2Z7BTR3 | 1e-140 | A0A2Z7BTR3_9LAMI; Uncharacterized protein | ||||
STRING | XP_009622295.1 | 7e-83 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3766 | 24 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G64530.1 | 3e-66 | xylem NAC domain 1 |
Publications ? help Back to Top | |||
---|---|---|---|
|