PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV37447.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family B3
Protein Properties Length: 286aa    MW: 32444.1 Da    PI: 9.2835
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV37447.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.84.2e-1878167198
                 EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                 f+k ++ps+v+   +l lpkkf++ h  ++ +   ++l de+g++++  +  ++++    l++GW++F k+++L  gD+++F+l++  +  l+v+++r
  KZV37447.1  78 FLKCMLPSNVSHGFWLHLPKKFCSLHLPNHDS--SIVLVDEWGNEYRTSYLLWRHG----LSAGWRGFSKSHRLLKGDVLIFHLIEPCK--LKVHIVR 167
                 89*********************988434334..7***************99***9....***********************997444..5888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.2E-2171167IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.43E-2473172IPR015300DNA-binding pseudobarrel domain
CDDcd100174.20E-2576167No hitNo description
SMARTSM010199.3E-2078169IPR003340B3 DNA binding domain
PfamPF023626.4E-1578167IPR003340B3 DNA binding domain
PROSITE profilePS5086312.08378169IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MRKKNVMQLG SREEGVAKKA KGLKSKDLQA CSESKKSGRN VRKRTRYIDM FEDVEARFSV  60
MERAERVLSH LQNEHPYFLK CMLPSNVSHG FWLHLPKKFC SLHLPNHDSS IVLVDEWGNE  120
YRTSYLLWRH GLSAGWRGFS KSHRLLKGDV LIFHLIEPCK LKVHIVRVHG PDVIGAALCL  180
MNWDTSDREP DSAENLVKKE IKMHGKQKYV EPFLIDSPTP SKHLKARNEP NSGSEPTADH  240
CGSNREGFSP KALEGSEISG QLQHNDQCHS KGSFFKNGPC DGIACM
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV37447.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011088276.11e-121B3 domain-containing protein At3g19184 isoform X1
TrEMBLA0A2Z7BYW90.0A0A2Z7BYW9_9LAMI; Uncharacterized protein
STRINGXP_009612758.15e-90(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16282371
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.19e-35B3 family protein