PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KZV37446.1

Organism

Dorcoceras hygrometricum

Taxonomic ID

472368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras

Family

Protein Properties

Length: 216aa MW: 24767.4 Da PI: 9.8013

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KZV37446.1	genome	CNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	48.7	1.4e-15	129	212	1	90
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 f+k +++s+v+ +l lp +f+++h +k ++ ++ l de+ ++ k+ k++ l++GW++F+ +++L +gD +vF+l++ ++f KZV37446.1 129 FVKPMLQSHVTGGFWLGLPVHFCKKHL-PK-RDEMVNLVDEDEVEFPTKYLALKTG----LSGGWRSFAIDHELVDGDALVFQLTDPTTF 212 89**********************5.33.5569***********666666....*********************9765555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	1.02E-22	123	215	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	5.8E-19	123	214	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.64E-24	127	214	No hit	No description
Pfam	PF02362	7.2E-14	129	212	IPR003340	B3 DNA binding domain
SMART	SM01019	1.1E-16	129	215	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.082	129	216	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 216 aa Download sequence Send to blast
MVATKEAAYE LSRLKRLEEN KKRMEELNLN KLAQHLRIQK PSPMKKVKPK VPKQSSDPSS 60 VRRSSRVADM PARSYKEVPI EPMGGRPRSY GYRRRDLSNR VYASDEDREY AIQRAEDLQS 120 GLDHDIPSFV KPMLQSHVTG GFWLGLPVHF CKKHLPKRDE MVNLVDEDEV EFPTKYLALK 180 TGLSGGWRSF AIDHELVDGD ALVFQLTDPT TFKVIS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KZV37446.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011088274.1	1e-117	B3 domain-containing protein At3g19184 isoform X2
Swissprot	Q1G3M3	4e-76	Y3918_ARATH; B3 domain-containing protein At3g19184
TrEMBL	A0A2Z7BT10	1e-158	A0A2Z7BT10_9LAMI; Uncharacterized protein
STRING	XP_009772546.1	1e-108	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1628	23	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	7e-70	B3 family protein

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]