PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV37294.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family C3H
Protein Properties Length: 347aa    MW: 39115.8 Da    PI: 6.8979
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV37294.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.72.1e-08129150426
                 ---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                 + C++f++ G C++Gd C +aHg
  KZV37294.1 129 SACPDFRK-GACRRGDACEYAHG 150
                 67******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003564.3E-5125151IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.281126152IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-6129150IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-5129152IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.042160184IPR000571Zinc finger, CCCH-type
SMARTSM0035612160183IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006979Biological Processresponse to oxidative stress
GO:0005886Cellular Componentplasma membrane
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MMMMIGDRLR LNPTVQIPHW DHHFAEDPTP HLHSPNVDVS HYENALAALH RYLPSNKEAI  60
VAEEEEEDGD PDDFDFPVDA FSCDNFRMFE FKVKKCTRAR PHDWTECPFA HPGEKARRRD  120
PRKYHYSGSA CPDFRKGACR RGDACEYAHG VFECWLHPAR YRTEPCKDGT HCRRRVCFFA  180
HTPDQLRVLP HSSPDASPGQ PEYGGPFGYS PTSALYSYSP PQSPRTLSPP LSPNVAALSQ  240
LSESVRCLQI SKPTLGVGSP SWGLQLGSGF GSPRSPNAVR VGFTSLPSTP IQPRIPSAFD  300
IWDTCCEEEP AMERVESGRQ LRERIYAKLS KENSLDRVDQ PLPSRNP
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV37294.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011081722.11e-163zinc finger CCCH domain-containing protein 23
SwissprotO821991e-103C3H20_ARATH; Zinc finger CCCH domain-containing protein 20
TrEMBLA0A2Z7BSD10.0A0A2Z7BSD1_9LAMI; Zinc finger CCCH domain-containing protein 23
STRINGMigut.A00165.1.p1e-150(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18572158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29190.16e-98C3H family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Swain S,Singh N,Nandi AK
    Identification of plant defence regulators through transcriptional profiling of Arabidopsis thaliana cdd1 mutant.
    J. Biosci., 2015. 40(1): p. 137-46
    [PMID:25740148]
  3. Singh N,Swain S,Singh A,Nandi AK
    AtOZF1 Positively Regulates Defense Against Bacterial Pathogens and NPR1-Independent Salicylic Acid Signaling.
    Mol. Plant Microbe Interact., 2018. 31(3): p. 323-333
    [PMID:29327969]