PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV37041.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family B3
Protein Properties Length: 671aa    MW: 75172.1 Da    PI: 5.439
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV37041.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3634.7e-20533630296
                 EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EE CS
          B3   2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvv 94 
                 +kvl++sdv+++gr+vlpkk ae+h  +++++ ++ + +ed  ++r+W++++++  ++ks++y+l+ ++ eFv+ ngL+egDf+v++  ++ +++++++
  KZV37041.1 533 QKVLKQSDVGNLGRIVLPKKEAESHlpELDSRDGIPIAMEDiGTSRVWNMRYRFwpNNKSRMYLLE-NTGEFVRMNGLQEGDFIVIY--SDtKCGKYMI 628
                 79*************************999999999*****7778*******99777777777777.********************..4449998887 PP

                 EE CS
          B3  95 kv 96 
                 + 
  KZV37041.1 629 RG 630
                 65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.7E-27526635IPR015300DNA-binding pseudobarrel domain
CDDcd100152.33E-33530631No hitNo description
SuperFamilySSF1019362.94E-22531628IPR015300DNA-binding pseudobarrel domain
SMARTSM010193.4E-20532634IPR003340B3 DNA binding domain
PROSITE profilePS5086310.546532634IPR003340B3 DNA binding domain
PfamPF023624.4E-16533629IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009657Biological Processplastid organization
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0031930Biological Processmitochondria-nucleus signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0001076Molecular Functiontranscription factor activity, RNA polymerase II transcription factor binding
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 671 aa     Download sequence    Send to blast
MEAHAGEKDL WLKRDHENFL DVNEASVFYG DFPPLPDFPC MSSSSSSSSV TPVVKPIAAT  60
SSSSSRASSS PSAEEDTGQR DFQQIRGSDD QVKAEHAALC STASMEIPPP PPPEYVGAGN  120
VDCIDVMETF GYMDLLDSND IWDPSSVFQC ENPQEFTEDQ QAADMAPPQL DQQMLSEEEN  180
DDGFNFLQGN SELATIFFEW LKQNKDYISA KDMRNIKLKR STIESASKRL GSTKEGKKQL  240
LKLILEWVEQ FQLQKIRTTE SCQQSTFPSQ ETAQNLEFNP NSFSHSNMSY INPPYPHPTT  300
CFPSTPWMPP QVAGDAAMMA QSPAFSPPMD CYGGGDSYTN YVHAAPLNYQ VANGIPYPAS  360
AEYSSMEQAQ PWVPMAPFAM PPPSQFSPFP DNGCLFPQPH NVYGNPYMLF DKNGERLVKL  420
GSLATKEARK KRMARQRSLY SYHNRRNSNL NQNHDQLNDQ HVVADDCENG SQESPTGDCM  480
YWSSIASSAN SSMMATVPPV DVPQQLNYPR QGASDRRQQQ GWKTEKNLKF LLQKVLKQSD  540
VGNLGRIVLP KKEAESHLPE LDSRDGIPIA MEDIGTSRVW NMRYRFWPNN KSRMYLLENT  600
GEFVRMNGLQ EGDFIVIYSD TKCGKYMIRG VKVRQPGTKL EGGKKPATRK NARSLSISRN  660
STSLARIKQS V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9b_A4e-365286321105B3 domain-containing transcription factor FUS3
6j9b_D4e-365286321105B3 domain-containing transcription factor FUS3
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00083PBMTransfer from AT3G24650Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV37041.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011080160.10.0B3 domain-containing transcription factor ABI3 isoform X1
TrEMBLA0A2Z7BR600.0A0A2Z7BR60_9LAMI; Uncharacterized protein
STRINGMigut.D00511.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA42702339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.11e-132B3 family protein