PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV36367.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family C2H2
Protein Properties Length: 289aa    MW: 32070.3 Da    PI: 8.4622
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV36367.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.40.001227249223
                 EETTTTEEESSHHHHHHHHHH.T CS
     zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                 +Cp C+ +Fs+   L+ H  + H
  KZV36367.1 227 VCPRCNLRFSSVGALVDHVEKvH 249
                 6*****************99888 PP
2zf-C2H216.91.7e-05261283223
                 EETTTTEEESSHHHHHHHHHH.T CS
     zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                 +Cp+C+k F+++  L+ H  + H
  KZV36367.1 261 VCPKCSKGFRDPVALVEHVEReH 283
                 7*****************99888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1183109.81E-12752No hitNo description
PROSITE profilePS510397.4911059IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.101.8E-91153IPR000058Zinc finger, AN1-type
SMARTSM001540.00311352IPR000058Zinc finger, AN1-type
PfamPF014281.1E-121351IPR000058Zinc finger, AN1-type
SuperFamilySSF1183104.97E-955145No hitNo description
Gene3DG3DSA:4.10.1110.107.6E-1090155IPR000058Zinc finger, AN1-type
PROSITE profilePS510398.03998151IPR000058Zinc finger, AN1-type
SMARTSM001540.07101142IPR000058Zinc finger, AN1-type
PfamPF014289.2E-8101141IPR000058Zinc finger, AN1-type
SMARTSM003550.15226249IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280228249IPR007087Zinc finger, C2H2
SMARTSM003553.6260283IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.787260288IPR007087Zinc finger, C2H2
PROSITE patternPS000280262283IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MGTPAFPNLG KHCSVDDCHQ IDFLPFTCDC CNRVFCLDHR SYGRHQCPKA NKNDVTVVVC  60
PLCAKGVRLI HNEDPNITWE SHVNIECDPS NYENTTKKRK CPVPGCREFL TFSNSIKCRD  120
CTLDHCLKHR FGPDHKCPGP KKPEPSYQFM GFLNRSQKED NKRGSVASSS NWASSFLKAA  180
SSVRATAEAG IARLSNEVNQ ALSKDGAVQS SNGSTSQHRR VSGQVEVCPR CNLRFSSVGA  240
LVDHVEKVHE RNGVMKATLD VCPKCSKGFR DPVALVEHVE REHRGVSKS
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in environmental stress response. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00306DAPTransfer from AT2G41835Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV36367.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, dehydration and salt stress. {ECO:0000269|PubMed:17033811}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011075237.11e-166zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
SwissprotQ0D5B91e-120SAP16_ORYSJ; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
TrEMBLA0A2Z7BVT80.0A0A2Z7BVT8_9LAMI; Uncharacterized protein
STRINGMigut.J01765.1.p1e-151(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA53112237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41835.11e-120C2H2 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]