PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV35802.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family C2H2
Protein Properties Length: 375aa    MW: 41141.5 Da    PI: 7.5519
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV35802.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H221.75.2e-07204226123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 + C  Cgk F+r  nL+ H+r H
  KZV35802.1 204 HYCRVCGKGFKRDANLRMHMRAH 226
                 68*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.46E-6202238No hitNo description
Gene3DG3DSA:3.30.160.607.4E-7204229IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.487204231IPR007087Zinc finger, C2H2
SMARTSM003550.0049204226IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280206226IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.4E-7264268IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035569266299IPR015880Zinc finger, C2H2-like
SMARTSM0035561304326IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MLISGATSCC PNGQQAAGSI PIYGVSEEMI PQNLESTTAT EQPPNTPSFF YNLSLLSDKV  60
QQVQSLASIF LTPQAEAEAE AAAALAPAMG TLIQEIIITA SSMMFACQQI SVGSTSTNGQ  120
AEAEDDNQVH GSYYSDHQGG MMEQWCGESY NNGNSNHISL SSEVCGRNLG PKPEITEESK  180
GVGIKSSCDI IELEAADLLA KYTHYCRVCG KGFKRDANLR MHMRAHGEEY KSSAALCNPM  240
KNVSGRDNED NNNNCSSMIR SSPKKYSCPQ EGCRWNKNHA KFQPLKSMIC VKNHYKRSHC  300
PKMYVCKRCH KKNFSVLSDL RTHEKHCGDL KWQCTCGTTF SRKDKLMGHV ALFVGHAPAE  360
NPITRINGTT EAARC
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00522DAPTransfer from AT5G22890Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV35802.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011089967.11e-141zinc finger protein STOP1 homolog
TrEMBLA0A2Z7BMC20.0A0A2Z7BMC2_9LAMI; Uncharacterized protein
STRINGMigut.N02542.1.p1e-138(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA112652225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.11e-101C2H2 family protein