PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV35800.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family C2H2
Protein Properties Length: 289aa    MW: 33408.1 Da    PI: 8.5231
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV35800.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.13.6e-06130149120
                 EEETTTTEEESSHHHHHHHH CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                 ++C++C+ksF+r  n++ H+
  KZV35800.1 130 FSCNICNKSFNRYNNMQMHM 149
                 89*****************9 PP
2zf-C2H212.90.00032214237123
                 EEET.TTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCp.dCgksFsrksnLkrHirtH 23 
                 + C   CgksF  k + ++H +++
  KZV35800.1 214 FICRkSCGKSFAVKGDWRTHEKNC 237
                 78999***************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.36E-6116153No hitNo description
Gene3DG3DSA:3.30.160.609.0E-6130149IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.616130157IPR007087Zinc finger, C2H2
PfamPF128741.7E-4130149No hitNo description
PROSITE patternPS000280132152IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.608.1E-6200235IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MSFFECPPYY SQQQPEIEKD SCFYKTIQFL PLLNRLTDQR RPLKEEENGI MEEEKEKLDN  60
LTVALNIGLP DLGDLMDSAE AKTVNYVKED QDCFVKKKKS SNSNGCKYFK SESRFWIPTA  120
SQILVGPMQF SCNICNKSFN RYNNMQMHMW GHGSEFRKGP ESLRGTQPAA MLRLPCYCCA  180
VGCKNNINHP QSKPLKDFRT LQTHYKRKHG SKPFICRKSC GKSFAVKGDW RTHEKNCGKL  240
WYCTCGSDFK HKRSLKDHIR SFGQGHSPYI EQNDKDCLSM GSEEELVVD
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV35800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027083750.11e-137zinc finger protein WIP3-like
RefseqXP_027181625.11e-137zinc finger protein WIP3-like
SwissprotQ9SGD11e-103ZWIP3_ARATH; Zinc finger protein WIP3
TrEMBLA0A2Z7BU900.0A0A2Z7BU90_9LAMI; TRANSPARENT TESTA 1 protein
STRINGVIT_06s0080g00270.t011e-126(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA46224133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08290.11e-101WIP domain protein 3
Publications ? help Back to Top
  1. Zhou X,Meier I
    Efficient plant male fertility depends on vegetative nuclear movement mediated by two families of plant outer nuclear membrane proteins.
    Proc. Natl. Acad. Sci. U.S.A., 2014. 111(32): p. 11900-5
    [PMID:25074908]