PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV35116.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family GRAS
Protein Properties Length: 488aa    MW: 53819.7 Da    PI: 5.7937
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV35116.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS331.12.1e-1011094811373
        GRAS   1 lvelLlecAeavssgdle..laqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                 l++lL+++Aea++  ++   la+ +L rl+el+sp++ ++m+Rlaayft AL+  l + ++   + l   e +    +++laa++l+++vsP++kf+h+
  KZV35116.1 109 LIHLLVAAAEALEGTNKCheLARVILVRLRELVSPKQgTNMERLAAYFTDALQGLLDGGGKCGGNHLYKAEHH---PTDVLAAFQLLQDVSPYVKFGHF 204
                 689*********99876545************888665*******************9555555555555554...899******************** PP

        GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpeg..ppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledlel 191
                 taNqaIleav +++r+Hi+D+di++G+QW++L+qaL sR++g  +p+lRiT+++++  g  s  +++etg+rL+ fA+++g pf+f+    ++ e++++
  KZV35116.1 205 TANQAILEAVTHDKRIHIVDYDIMEGIQWASLMQALVSRKDGpaTPHLRITALSRSCGGrrSFSTIQETGRRLTAFAASIGQPFSFHQCRLDSDETFKP 303
                 ****************************************762358*********666599999************************9999******* PP

        GRAS 192 eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerflealeyysalfdsleaklpreseerikvErel 289
                 ++L++ +gEal++n++l+l ++       ++ + ++++  ++l P++v++ve+e+   ++e F+ rf+++l++ysa++dslea++p + ++r+ vEr++
  KZV35116.1 304 SNLKLVRGEALIINCMLHLPHFS---YRAPNSIASFISGAQTLGPRLVTLVEEEIGPtGEEGFVGRFMDSLHHYSAIYDSLEAGFPMQGRARTLVERVF 399
                 *******************9998...455555669*******************88779**************************************** PP

        GRAS 290 lgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee.sgslvlgWkdrpLvsvSaW 373
                 lg++i+  +a   +     +e+  +W +rl ++GF p ++s  + +qakll+  ++ dgyrvee+  + lvlgWk+r+L+svS W
  KZV35116.1 400 LGPRISGSLARIYRG--GGEEEGCSWGQRLAACGFCPTNISFANHCQAKLLIGLYN-DGYRVEESsINKLVLGWKSRRLLSVSIW 481
                 **********99988..7778889*******************************9.******88359999************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098550.28683462IPR005202Transcription factor GRAS
PfamPF035147.1E-99109481IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MAMLMDLDFT SFGYSGTTTT TTTTGSALSD DGCNWNAWSP VVDWEALSGG QEDFHNLVDS  60
MMDESDFGLQ GLNVRPNIDI EEECHYLYNA TTTDHDESNG PEDLKGMRLI HLLVAAAEAL  120
EGTNKCHELA RVILVRLREL VSPKQGTNME RLAAYFTDAL QGLLDGGGKC GGNHLYKAEH  180
HPTDVLAAFQ LLQDVSPYVK FGHFTANQAI LEAVTHDKRI HIVDYDIMEG IQWASLMQAL  240
VSRKDGPATP HLRITALSRS CGGRRSFSTI QETGRRLTAF AASIGQPFSF HQCRLDSDET  300
FKPSNLKLVR GEALIINCML HLPHFSYRAP NSIASFISGA QTLGPRLVTL VEEEIGPTGE  360
EGFVGRFMDS LHHYSAIYDS LEAGFPMQGR ARTLVERVFL GPRISGSLAR IYRGGGEEEG  420
CSWGQRLAAC GFCPTNISFA NHCQAKLLIG LYNDGYRVEE SSINKLVLGW KSRRLLSVSI  480
WSSKDNES
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A4e-5810248411380Protein SCARECROW
5b3h_D4e-5810248411380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking and DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK). {ECO:0000269|PubMed:15961668}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV35116.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced 24 hours after treatment with Nod factor or Sinorhizobium meliloti. {ECO:0000269|PubMed:15961668}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011069635.10.0nodulation-signaling pathway 2 protein
SwissprotQ5NE240.0NSP2_MEDTR; Nodulation-signaling pathway 2 protein
TrEMBLA0A2Z7BLE70.0A0A2Z7BLE7_9LAMI; Nodulation-signaling pathway 2 protein
STRINGXP_010042750.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA122411923
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.11e-159GRAS family protein
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]