PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | KZV34945.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 260aa MW: 29057.7 Da PI: 6.6681 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.7 | 1.1e-17 | 10 | 55 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W +eEd+ll ++vk++G+++W++I++ + gR++k+c++rw + KZV34945.1 10 KGSWNKEEDDLLRKLVKEHGPRNWSLISNGIS-GRSGKSCRLRWCNQ 55 799*****************************.***********985 PP | |||||||
2 | Myb_DNA-binding | 56.6 | 5.8e-18 | 64 | 106 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++TteEd+ +++a++ +G++ W+tI+r ++ gRt++ +k++w++ KZV34945.1 64 PFTTEEDDVILQAHAVHGNR-WATISRLLP-GRTDNAIKNHWNST 106 89******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 24.809 | 1 | 60 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.13E-30 | 7 | 103 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.4E-16 | 9 | 58 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.0E-17 | 10 | 55 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.7E-23 | 11 | 63 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.57E-14 | 12 | 54 | No hit | No description |
PROSITE profile | PS51294 | 20.723 | 61 | 111 | IPR017930 | Myb domain |
SMART | SM00717 | 1.5E-14 | 61 | 109 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-14 | 64 | 106 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.60E-11 | 64 | 107 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.7E-22 | 64 | 110 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 260 aa Download sequence Send to blast |
MESAVVGKTK GSWNKEEDDL LRKLVKEHGP RNWSLISNGI SGRSGKSCRL RWCNQLSPVV 60 QHRPFTTEED DVILQAHAVH GNRWATISRL LPGRTDNAIK NHWNSTLRKK GGGWLAGEAA 120 AKQRRSWEEN GRGSSELGLK RQCSRVSPER SSCSGDVALE VEKMGLNGPD GLQASLDLSL 180 SPPGDGVMEL PCSEMNVIKK EEIEIVDKEQ EKKSTVEIED TCLETVMRRI IAQEVRNYFE 240 TMQAEDGLRF GPQCQSPDYI |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 2e-37 | 10 | 110 | 4 | 104 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 2e-37 | 10 | 110 | 4 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 2e-37 | 10 | 110 | 4 | 104 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | KZV34945.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012830054.1 | 4e-89 | PREDICTED: transcription factor MYB44-like | ||||
TrEMBL | A0A2Z7BS40 | 0.0 | A0A2Z7BS40_9LAMI; Myb-related protein B | ||||
STRING | Migut.F01484.1.p | 2e-88 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12883 | 16 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G37260.1 | 2e-52 | myb domain protein 73 |