PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV34848.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family GATA
Protein Properties Length: 237aa    MW: 26630.9 Da    PI: 6.3927
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV34848.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.57.5e-18169203135
        GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                 C++C + kTp+WR gp g+ktLCnaCG++y+  +l
  KZV34848.1 169 CQHCLVDKTPQWRAGPMGPKTLCNACGVRYKAGRL 203
                 *******************************8875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.2E-14163217IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.266166199IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.103.4E-14166204IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577166.18E-14166226No hitNo description
CDDcd002021.94E-13168216No hitNo description
PfamPF003201.4E-15169203IPR000679Zinc finger, GATA-type
PROSITE patternPS003440169194IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MELLSEFEEA FMTDDNFLFN FTDGGGSSTV KYGGPDSSSN DKTTTFGPGT QTYPFPVDES  60
DLGKPRFGIW ECDPIEDMEW LMDEEAFPPL ESCFGVLSDD SEFMSNHLSP ISVLDTVKAN  120
LDMPFNHPKG TRSNKRRRRT TGYGDLPSLW SSHTSAKIRQ ESILVGRRCQ HCLVDKTPQW  180
RAGPMGPKTL CNACGVRYKA GRLHPEYRPA CSPTFSSLLH SNSHKKVMEM RTKKQSD
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00377DAPTransfer from AT3G24050Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV34848.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ8LAU93e-37GATA1_ARATH; GATA transcription factor 1
TrEMBLA0A328EA614e-53A0A328EA61_9ASTE; Uncharacterized protein
TrEMBLA0A484M0Q54e-53A0A484M0Q5_9ASTE; Uncharacterized protein
STRINGMigut.G00615.1.p8e-49(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40762445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24050.11e-39GATA transcription factor 1