PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KZV34808.1

Organism

Dorcoceras hygrometricum

Taxonomic ID

472368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras

Family

GRAS

Protein Properties

Length: 914aa MW: 100483 Da PI: 6.0142

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KZV34808.1	genome	CNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	288.6	1.8e-88	36	383	3	350
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl.fsevsPilkfshltaNq 100 +lL ecA+a+s++d +++++lL+ l+elasp+gd q+la+yf++AL + ++s++++ k+l + ++++++ +++ l l f+evsP+ +f+h++ N KZV34808.1 36 KLLRECATAMSDKDSTKIHHLLWMLNELASPYGDCDQKLASYFLQALFCKATDSGHRCHKTLVSVAEKSHS-FDSIRKLILkFQEVSPWTTFGHVASNG 133 7999********************************************************999888544.4444444445************* PP GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl.vakrledleleeLrvkp 198 aIlea+ege+++Hi+D++ + ++QWp+Ll+aLa+R++++psl++T+v+ +s k ++e++ r++kf + +gvpfef+v+ +rl dl+ e L v++ KZV34808.1 134 AILEALEGESKIHIVDISNTLCTQWPTLLEALATRSDETPSLKLTVVVT-TSIAKSVMKEIAPRMEKFGRLMGVPFEFKVVsGLNRLGDLRKECLGVQE 231 *********************************************.6679**********************95567********** PP GRAS 199 gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh..nsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295 +EalaVn+v +l +++ +e+ r++v+k+++ l+P+vv++ve+ead ++++F + f e+l++y++ fd+l++++p++s+e+ ++Ere +r iv KZV34808.1 232 DEALAVNCVGALRKVH-----VEE-RRDVIKMIQILRPRVVTIVEEEADFtsTRNDFIKCFEECLRFYTTYFDMLQESFPTTSNEKLMLERE-CSRTIV 323 ***********8.....444.889***************999545669********************************.89 PP GRAS 296 nvvacegae....rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyr 350 v+ac ++ +er+e+ +W erl+++G+++v +s+++ +++k+ll+++ ++ y KZV34808.1 324 RVLACDDESdqggDNERRESGIQWAERLRDSGLSSVGYSDDVIDDIKALLKRYRaGWSYV 383 *87763344579***********************************9666665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	47.617	8	386	IPR005202	Transcription factor GRAS
Pfam	PF03514	6.1E-86	36	383	IPR005202	Transcription factor GRAS
SuperFamily	SSF103473	2.09E-61	466	906	IPR020846	Major facilitator superfamily domain
TIGRFAMs	TIGR00879	1.0E-95	469	905	IPR003663	Sugar/inositol transporter
Gene3D	G3DSA:1.20.1250.20	6.5E-22	473	656	No hit	No description
PROSITE profile	PS50850	39.877	474	898	IPR020846	Major facilitator superfamily domain
CDD	cd06174	4.30E-41	475	894	IPR020846	Major facilitator superfamily domain
Pfam	PF00083	3.7E-95	476	907	IPR005828	Major facilitator, sugar transporter-like
PRINTS	PR00171	1.8E-17	482	492	IPR003663	Sugar/inositol transporter
PRINTS	PR00171	1.8E-17	567	586	IPR003663	Sugar/inositol transporter
PROSITE pattern	PS00217	0	572	597	IPR005829	Sugar transporter, conserved site
Gene3D	G3DSA:1.20.1250.20	5.5E-12	716	906	No hit	No description
PRINTS	PR00171	1.8E-17	723	733	IPR003663	Sugar/inositol transporter
PRINTS	PR00171	1.8E-17	810	831	IPR003663	Sugar/inositol transporter

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0055085	Biological Process	transmembrane transport
GO:0016021	Cellular Component	integral component of membrane
GO:0022891	Molecular Function	substrate-specific transmembrane transporter activity

Sequence ? help Back to Top
Protein Sequence Length: 914 aa Download sequence Send to blast
MLDQLDTQGS GFSNSTSAAS QSSDSVEASD AKWASKLLRE CATAMSDKDS TKIHHLLWML 60 NELASPYGDC DQKLASYFLQ ALFCKATDSG HRCHKTLVSV AEKSHSFDSI RKLILKFQEV 120 SPWTTFGHVA SNGAILEALE GESKIHIVDI SNTLCTQWPT LLEALATRSD ETPSLKLTVV 180 VTTSIAKSVM KEIAPRMEKF GRLMGVPFEF KVVSGLNRLG DLRKECLGVQ EDEALAVNCV 240 GALRKVHVEE RRDVIKMIQI LRPRVVTIVE EEADFTSTRN DFIKCFEECL RFYTTYFDML 300 QESFPTTSNE KLMLERECSR TIVRVLACDD ESDQGGDNER RESGIQWAER LRDSGLSSVG 360 YSDDVIDDIK ALLKRYRAGW SYVLPTGSVD DSAPRWHSTV LLRTPTILSR KHPVCPSISC 420 SFLSNKDFRL YAAKQRQIPE LEPQDSDGQK KLLFTERSSA DEGIEFGWWP AFPHVLTASM 480 SNFLFGYHIG VMNGPIVSIA KELGFEGNSF LEGLVVSIFI GGAFIGSISC GSLVDKLGCR 540 RTFQISTIPL ILGAIFSAQA HSLNEILCGR FLVGLGIGVN TVLVPIYVSE IAPTKFRGTL 600 GTVSQIGTCL GIIASLCLGI PSENDPHWWR VILYMATIPG FIIALGMQFA VDSPRWLCKA 660 GKLREAKKVI SSLWGPSEVD KVIEEFQSVI KNDGDDLDSA WLELLAEPHS RVAFIGGALF 720 ILQQFAGING VLYFSSLTFR DVGITSSAFA SLYVGCTNLA GALCASYLMD KQGRQVLLIG 780 SYLGMAVSMF AIVGGISLPL GSEMSSNLSI LGTIVYIFTF ALGAGPVTGL IIPELSSNRT 840 RGKIMAFSFS VHWVFNFVVG LYFLELVEKF GVAPVYTGFG GVSLLAAVFA YYFIVETKGR 900 SLEEIEVSLS RDRK

Sequence ? help Back to Top

Protein Sequence Length: 914 aa Download sequence Send to blast

MLDQLDTQGS GFSNSTSAAS QSSDSVEASD AKWASKLLRE CATAMSDKDS TKIHHLLWML  60
NELASPYGDC DQKLASYFLQ ALFCKATDSG HRCHKTLVSV AEKSHSFDSI RKLILKFQEV  120
SPWTTFGHVA SNGAILEALE GESKIHIVDI SNTLCTQWPT LLEALATRSD ETPSLKLTVV  180
VTTSIAKSVM KEIAPRMEKF GRLMGVPFEF KVVSGLNRLG DLRKECLGVQ EDEALAVNCV  240
GALRKVHVEE RRDVIKMIQI LRPRVVTIVE EEADFTSTRN DFIKCFEECL RFYTTYFDML  300
QESFPTTSNE KLMLERECSR TIVRVLACDD ESDQGGDNER RESGIQWAER LRDSGLSSVG  360
YSDDVIDDIK ALLKRYRAGW SYVLPTGSVD DSAPRWHSTV LLRTPTILSR KHPVCPSISC  420
SFLSNKDFRL YAAKQRQIPE LEPQDSDGQK KLLFTERSSA DEGIEFGWWP AFPHVLTASM  480
SNFLFGYHIG VMNGPIVSIA KELGFEGNSF LEGLVVSIFI GGAFIGSISC GSLVDKLGCR  540
RTFQISTIPL ILGAIFSAQA HSLNEILCGR FLVGLGIGVN TVLVPIYVSE IAPTKFRGTL  600
GTVSQIGTCL GIIASLCLGI PSENDPHWWR VILYMATIPG FIIALGMQFA VDSPRWLCKA  660
GKLREAKKVI SSLWGPSEVD KVIEEFQSVI KNDGDDLDSA WLELLAEPHS RVAFIGGALF  720
ILQQFAGING VLYFSSLTFR DVGITSSAFA SLYVGCTNLA GALCASYLMD KQGRQVLLIG  780
SYLGMAVSMF AIVGGISLPL GSEMSSNLSI LGTIVYIFTF ALGAGPVTGL IIPELSSNRT  840
RGKIMAFSFS VHWVFNFVVG LYFLELVEKF GVAPVYTGFG GVSLLAAVFA YYFIVETKGR  900
SLEEIEVSLS RDRK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_B	1e-129	10	383	6	395	Protein SHORT-ROOT
5b3h_E	1e-129	10	383	6	395	Protein SHORT-ROOT
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	May be involved in the efflux of glucose towards the cytosol. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KZV34808.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011073837.1	0.0	probable plastidic glucose transporter 1 isoform X1
Swissprot	Q0WVE9	0.0	PLST1_ARATH; Probable plastidic glucose transporter 1
TrEMBL	A0A2G9GJQ5	0.0	A0A2G9GJQ5_9LAMI; Putative transporter (Major facilitator superfamily)
STRING	Migut.N03095.1.p	0.0	(Erythranthe guttata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37650.1	1e-129	GRAS family protein

Publications ? help Back to Top
Johnson DA,Hill JP,Thomas MA The monosaccharide transporter gene family in land plants is ancient and shows differential subfamily expression and expansion across lineages. BMC Evol. Biol., 2006. 6: p. 64 [PMID:16923188] Chaparro JM, et al. Root exudation of phytochemicals in Arabidopsis follows specific patterns that are developmentally programmed and correlate with soil microbial functions. PLoS ONE, 2013. 8(2): p. e55731 [PMID:23383346]