PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KZV34250.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
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Family | NAC | ||||||||
Protein Properties | Length: 321aa MW: 36128.2 Da PI: 9.0649 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 172.1 | 1.7e-53 | 3 | 129 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 lppGfrFhPtdeel+++yL kkv ++++++ +i +vd++k+ePwdLp +++ +ekewyfF+ rdkky+tg r+nrat +gyWkatgkdke+++ +++l KZV34250.1 3 LPPGFRFHPTDEELITHYLSKKVLDSSFSC-IAIGDVDMNKIEPWDLPWRANLGEKEWYFFCVRDKKYPTGLRTNRATLAGYWKATGKDKEIFR-GKTL 99 79***************************9.88***************888899****************************************.999* PP NAM 100 vglkktLvfykgrapkgektdWvmheyrle 129 vg+kktLvfykgrap+gek++Wv heyrle KZV34250.1 100 VGMKKTLVFYKGRAPRGEKSNWVTHEYRLE 129 ****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.84E-58 | 2 | 153 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 56.2 | 3 | 153 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.4E-27 | 4 | 128 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 321 aa Download sequence Send to blast |
MELPPGFRFH PTDEELITHY LSKKVLDSSF SCIAIGDVDM NKIEPWDLPW RANLGEKEWY 60 FFCVRDKKYP TGLRTNRATL AGYWKATGKD KEIFRGKTLV GMKKTLVFYK GRAPRGEKSN 120 WVTHEYRLEG KLSFDNFPKP AKNDWVISRV FHKTSGGKKV HISGLMRMNP KGIDSVSALP 180 PLMDPNPPFD ESRKLVESGL NHVHCFSNPM ASRRGQESLA NPFNNPMDSF PWGQVHAVQG 240 GMGFPIPASV QFQDPSILRT LLGNYRPNVG KEMASLPQET GLSNEESSVP SNLEMPKKSF 300 SDQEAPSASV GAQDIDCIWS Y |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-49 | 1 | 159 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-49 | 1 | 159 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-49 | 1 | 159 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-49 | 1 | 159 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
4dul_A | 1e-49 | 1 | 159 | 15 | 171 | NAC domain-containing protein 19 |
4dul_B | 1e-49 | 1 | 159 | 15 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KZV34250.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011071688.1 | 1e-149 | NAC domain-containing protein 79 | ||||
Refseq | XP_011071689.1 | 1e-149 | NAC domain-containing protein 79 | ||||
Refseq | XP_020547905.1 | 1e-149 | NAC domain-containing protein 79 | ||||
Swissprot | Q9FLJ2 | 1e-118 | NC100_ARATH; NAC domain-containing protein 100 | ||||
TrEMBL | A0A2Z7BJ03 | 0.0 | A0A2Z7BJ03_9LAMI; Uncharacterized protein | ||||
STRING | EOY21905 | 1e-135 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA152 | 24 | 279 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61430.1 | 1e-121 | NAC domain containing protein 100 |
Publications ? help Back to Top | |||
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