PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KZV33950.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 136aa MW: 15676 Da PI: 10.5257 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 37.4 | 4.3e-12 | 3 | 30 | 29 | 56 |
HHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 29 ereeLAkklgLterqVkvWFqNrRakek 56 +++ LA++l+L+ rqV vWFqNrRa+ k KZV33950.1 3 QKQLLAERLNLKPRQVEVWFQNRRARTK 30 6789**********************98 PP | |||||||
2 | HD-ZIP_I/II | 76.1 | 6.2e-25 | 3 | 67 | 28 | 92 |
HD-ZIP_I/II 28 rKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +K+ la++L+l+prqv+vWFqnrRARtk+kq+E + e+Lk+ +++l++en++L+++ eLr+++k KZV33950.1 3 QKQLLAERLNLKPRQVEVWFQNRRARTKLKQTEINREFLKKDCERLSDENRQLKRQLLELRSSVK 67 899**********************************************************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 12.665 | 1 | 32 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 8.55E-10 | 3 | 40 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 1.8E-9 | 3 | 30 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.28E-7 | 3 | 33 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.1E-10 | 3 | 30 | IPR009057 | Homeodomain-like |
PROSITE pattern | PS00027 | 0 | 7 | 30 | IPR017970 | Homeobox, conserved site |
SMART | SM00340 | 3.0E-7 | 32 | 75 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 136 aa Download sequence Send to blast |
MVQKQLLAER LNLKPRQVEV WFQNRRARTK LKQTEINREF LKKDCERLSD ENRQLKRQLL 60 ELRSSVKTEN PPPPAPQLRQ FFNPMSKAAA AGLKTCPSCE QVWSDRGGAK EETTAAAAVM 120 EVGHEYKLIR RGSLET |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 24 | 32 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KZV33950.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}. | |||||
UniProt | INDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022886874.1 | 2e-44 | homeobox-leucine zipper protein HAT22-like | ||||
Swissprot | A2XE76 | 1e-28 | HOX19_ORYSI; Homeobox-leucine zipper protein HOX19 | ||||
Swissprot | Q8GRL4 | 1e-28 | HOX19_ORYSJ; Homeobox-leucine zipper protein HOX19 | ||||
TrEMBL | A0A2Z7BI52 | 5e-95 | A0A2Z7BI52_9LAMI; Uncharacterized protein | ||||
STRING | GSMUA_Achr10P23440_001 | 3e-29 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA290 | 24 | 186 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37790.1 | 8e-28 | HD-ZIP family protein |