PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV33214.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family MYB
Protein Properties Length: 264aa    MW: 29012.9 Da    PI: 5.4815
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV33214.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding63.25.1e-201560147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W++eEd+ll ++vk++G ++W++I+r ++ gR++k+c++rw + 
       KZV33214.1 15 KGPWSPEEDQLLRKLVKMYGAKNWSLISRSIP-GRSGKSCRLRWCNQ 60
                     79******************************.***********985 PP
2Myb_DNA-binding52.21.4e-1669110346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      ++T eEde++++a++++G++ W+ Ia+ +  gRt++ +k++w++
       KZV33214.1  69 PFTVEEDEIILKAHEKFGNK-WAMIAKLIS-GRTDNAIKNHWNS 110
                      89******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.1961065IPR017930Myb domain
SuperFamilySSF466891.83E-3214108IPR009057Homeodomain-like
SMARTSM007175.7E-181463IPR001005SANT/Myb domain
PfamPF002492.7E-191560IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-261668IPR009057Homeodomain-like
CDDcd001672.84E-171759No hitNo description
SMARTSM007179.6E-1566114IPR001005SANT/Myb domain
PROSITE profilePS5129421.43667116IPR017930Myb domain
PfamPF002495.7E-1469110IPR001005SANT/Myb domain
CDDcd001671.85E-1269112No hitNo description
Gene3DG3DSA:1.10.10.601.5E-2269115IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MAAEAVVAVG GDGVKGPWSP EEDQLLRKLV KMYGAKNWSL ISRSIPGRSG KSCRLRWCNQ  60
LSPEVEHRPF TVEEDEIILK AHEKFGNKWA MIAKLISGRT DNAIKNHWNS KLKRKASISG  120
VGSGGDRPGQ LLRRADVEDV SMALRNVCSS LSLDSETSDT CNYVDFISPV TSNLTSAAPI  180
EFPPEIVDDK YDPDSSLTAL TLCLPGTETD PSTKDCVTTW RCGGGDISRV GEKRETLSFD  240
PELLPVIQEM IREEVRNYVS GLKG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-40121164108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV33214.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020551750.15e-93transcription factor MYB44-like
TrEMBLA0A2Z7BFL60.0A0A2Z7BFL6_9LAMI; Uncharacterized protein
STRINGMigut.B00390.1.p8e-79(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15862471
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.12e-59myb domain protein 73