PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV33092.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family TCP
Protein Properties Length: 406aa    MW: 43085.5 Da    PI: 8.0272
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV33092.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP127.51.4e-39102209389
         TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg............ 88 
                 ++k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLl qa+pai+++tgt++++a+++  ++s +ss+ + s++            
  KZV33092.1 102 AAKKPSKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLHQAEPAIIAATGTGTIPANFStLNVSLRSSGTTISAPpsksaplflggt 200
                 5799****************************************************************9998777777777744444444555666555 PP

         TCP  89 ........k 89 
                         +
  KZV33092.1 201 tgmlgfhpQ 209
                 555555441 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136927.954107161IPR017887Transcription factor TCP subgroup
PfamPF036343.0E-37107217IPR005333Transcription factor, TCP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MEFMEPHSKN KGSGGNSDHH ESASSLQLVS PHHQRQSQPE PGSGSGPAPS LGPFNMGSIS  60
MQQSRALVPS SSTPTATTNN PPTNTATNSD GNNNNSLVAT KAAKKPSKDR HTKVDGRGRR  120
IRMPALCAAR VFQLTRELGH KSDGETIEWL LHQAEPAIIA ATGTGTIPAN FSTLNVSLRS  180
SGTTISAPPS KSAPLFLGGT TGMLGFHPQL TSSSTNFGQD PDENYLKKRF REDSSGASSP  240
KPGRSGVQDQ EPGSDPKPGL THSSSYISGP AMWAVAPAPA NMGNTFWMLP VTGGGASTTP  300
VGQQEWQYKA SHVQRIGGFE FPGAGRFNPV QIGSMVLQQA QPPVQQLGLG LTETNMGMLA  360
SLNAYHSNTD SRIDLGMNLE HHHHHHRSQP QNSDSGDDNE NPKDSQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00614PBMTransfer from AT1G35560Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV33092.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011096575.11e-175LOW QUALITY PROTEIN: transcription factor TCP23
SwissprotQ9LQF02e-69TCP23_ARATH; Transcription factor TCP23
TrEMBLA0A2Z7BFH20.0A0A2Z7BFH2_9LAMI; TCP transcription factor 12
STRINGXP_009775051.11e-158(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24824201
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35560.15e-67TCP family protein