PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV32154.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family GRAS
Protein Properties Length: 586aa    MW: 64750.8 Da    PI: 4.9728
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV32154.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS347.42.4e-1062205854373
        GRAS   4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaI 102
                 +Ll+cA+ +s++d e+a   L +l++ +sp+g p++R+  yf eAL  r++   +++ +a    +t+    +e ++++k++++++P  kf+hltaNqaI
  KZV32154.1 220 ALLDCAR-ISDSDPEKAVISLLQLRDSVSPHGHPLERVSYYFSEALYCRVSP--PGVKAATVNDNTT---CEEFTSSYKVLNDACPNSKFAHLTANQAI 312
                 799***9.8999***************************************9..7777666666665...999************************** PP

        GRAS 103 leavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvk 197
                 lea+e+++++H++Df+i qG+QW+aLlqaLa+Rp+g+p ++Ri g+   + g   ++++l +tg+rL +fA+ l+++fef++ v + + +le +++rv+
  KZV32154.1 313 LEATETAKKIHVVDFGIVQGVQWAALLQALATRPAGKPdRIRISGIPTTALGhttRATSLFATGKRLLDFAKLLDLNFEFEP-VLTPVRELEKSSFRVE 410
                 **********************************77666********987778889999***********************.799************* PP

        GRAS 198 pgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivn 296
                 p+E++aVn++lql++ ldes +  +   + Lkl ksl+Pkvv++ e e+++n++ F+ rf +al+yy+a+f+sl+ ++ r+s eri vE  +lgr+i  
  KZV32154.1 411 PDEVTAVNFMLQLYNSLDESDEGVE---AALKLAKSLNPKVVTLGEYEVKLNRAGFFPRFKNALKYYTAVFESLDRNMDRDSPERIQVESLVLGRRIAG 506
                 *****************88887777...9********************************************************************** PP

        GRAS 297 vvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveee..sgslvlgWkdrpLvsvSaW 373
                 vv  e++ rrer+e +e+Wr  +e aGF+p+ +s++a +qak ll k++ s  y++ e+   g l l W+d pL++vS+W
  KZV32154.1 507 VVGPEEQ-RRERMEDKERWRILMEGAGFQPLVFSHYALSQAKILLWKYSySSCYKLVESspPGFLSLAWNDVPLLTVSSW 585
                 ****998.69***************************************9999***9883345556************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098556.514191563IPR005202Transcription factor GRAS
PfamPF035148.2E-104220585IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 586 aa     Download sequence    Send to blast
MAYMCTDSGN LMAIAQQVIQ QKQQQEQQQQ QFLNINPFCL TSSAAAPLHH ATVSSATISY  60
GFLDPFSVSS GGEPGTTESG FHFPSLDHHS TTGYRFSDLS DGLGGDFDSE EWMESLIGGG  120
DSTESSNLRT DCDVWRPDSD FNTHVYEPHP FPSRLRVNSS PPSDVARVIF SDPAPALVQP  180
SSAVKETNPV IQEDDAGGCN AVDSTSSPET FPKRKPYLGA LLDCARISDS DPEKAVISLL  240
QLRDSVSPHG HPLERVSYYF SEALYCRVSP PGVKAATVND NTTCEEFTSS YKVLNDACPN  300
SKFAHLTANQ AILEATETAK KIHVVDFGIV QGVQWAALLQ ALATRPAGKP DRIRISGIPT  360
TALGHTTRAT SLFATGKRLL DFAKLLDLNF EFEPVLTPVR ELEKSSFRVE PDEVTAVNFM  420
LQLYNSLDES DEGVEAALKL AKSLNPKVVT LGEYEVKLNR AGFFPRFKNA LKYYTAVFES  480
LDRNMDRDSP ERIQVESLVL GRRIAGVVGP EEQRRERMED KERWRILMEG AGFQPLVFSH  540
YALSQAKILL WKYSYSSCYK LVESSPPGFL SLAWNDVPLL TVSSWC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-1392165853374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development (By similarity). Involved in environmental abiotic stress resistance. May increase the expression of stress-responsive genes (PubMed:20616154). Binds DNA in vitro (By similarity). {ECO:0000250|UniProtKB:Q53K16, ECO:0000250|UniProtKB:Q9SCR0, ECO:0000269|PubMed:20616154}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV32154.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by drought and high salt stresses, and down-regulated by gibberellic acid (GA) treatment, but not by plant hormone abscisic acid (ABA) application in leaves. Under the salt treatment, expression is induced quickly, and it peaks at 3 hours. Under the drought treatment, the expression is not induced immediately, but reaches its maximum at 3 hours. Under the GA treatment, the expression becomes weaker within 5 hours. {ECO:0000269|PubMed:20616154}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011099604.10.0scarecrow-like protein 4
RefseqXP_020554688.10.0scarecrow-like protein 4
SwissprotA0A024B7I00.0SCL7_POPEU; SCARECROW-LIKE protein 7
TrEMBLA0A2Z7BCD10.0A0A2Z7BCD1_9LAMI; Scarecrow-like protein 4
STRINGMigut.H00996.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA89052429
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.10.0GRAS family protein