PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV31538.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family bHLH
Protein Properties Length: 610aa    MW: 68597.2 Da    PI: 5.8068
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV31538.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.23.3e-14423470355
                 HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 r+h   Er+RR++iN++f  L +l+P+      +K++K++iL +++eY+k+L+
  KZV31538.1 423 RNHVLSERKRREKINERFMILGSLVPSG-----GKVDKVSILDHTIEYLKELE 470
                 679999********************98.....8****************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.3E-4214184IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.901420469IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.77E-15423474No hitNo description
PfamPF000109.9E-12423470IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.42E-19423487IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.2E-18424486IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.7E-17426475IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009957Biological Processepidermal cell fate specification
GO:0010091Biological Processtrichome branching
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 610 aa     Download sequence    Send to blast
MATGKNSKHV PENLKKQLAL AVRNIQWNYA IFWVLTWGDG YYNGDIKTRK TVQAADLNTD  60
QLGLQRSDQL RELFESLSTG ESNQQAKRPT AALSPEDLTD AEWYFLVCMS FAFSIGQGLP  120
GKTFAENRTI WLANAHLADT KVFSRSLLSK AIVCFPHLGG VIELGATDLV PEDPNLIQHI  180
KTSFLDIPSS FVSNIPSHVS NKSTNNVLIS ETPDNANMLE KEVDQFLDCP DVEICSRDDS  240
SNDFGVNILR EESNLAEGVD GEASQIQNWF VDEAISNGLN NSTNSSDCIS QTYENPEIVI  300
PLVDGYKVTS NLEHNNLESC QQKPKSGPQT DDIHYQSVLT NLLKSSHQLM FGPYVRNGNK  360
ESNFVSWKKD GPSSARLPRI QTPQTLLKKV IFEVPRMHQC RLESDRQKGK KDVSLKEADE  420
NDRNHVLSER KRREKINERF MILGSLVPSG GKVDKVSILD HTIEYLKELE RKVEELESYK  480
EVMEQESRIK GKSHDAIEQT SDNYGQNRTG NGKRPLTNKR KACEIDKVGL VKNRVKLRDS  540
STDDITVKVV DKGVIIETKC SWNECVLLEV METLSKLHLH PQSVQTSNSD GVLSMTIKAE  600
VSFPDNIIWN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A1e-152718424192Transcription factor MYC3
4rqw_B1e-152718424192Transcription factor MYC3
4rs9_A1e-152718424192Transcription factor MYC3
4yz6_A1e-152718424192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1428433ERKRRE
2429434RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV31538.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022853662.10.0transcription factor GLABRA 3-like
TrEMBLA0A2Z7BHD00.0A0A2Z7BHD0_9LAMI; Basic helix-loop-helix DNA-binding superfamily protein isoform 1
STRINGMigut.E01090.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45762435
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41315.11e-156bHLH family protein