PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV30453.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family C2H2
Protein Properties Length: 511aa    MW: 57568.8 Da    PI: 7.4311
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV30453.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.10.0006195116223
                 EETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                 +C+ Cgk F +   L  H+ +H
  KZV30453.1  95 VCKQCGKGFQSMKALCGHMAVH 116
                 6******************998 PP
2zf-C2H211.10.0012444466123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 + Cp C ++F++   L  H r+H
  KZV30453.1 444 HICPFCQRVFKNGQALGGHKRSH 466
                 68******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139120.0018931IPR007087Zinc finger, C2H2
SMARTSM003550.53931IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.6931IPR007087Zinc finger, C2H2
PROSITE patternPS0002801131IPR007087Zinc finger, C2H2
SMARTSM003550.0494116IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.40894121IPR007087Zinc finger, C2H2
PfamPF139124.8E-595118IPR007087Zinc finger, C2H2
SuperFamilySSF576671.6E-695116No hitNo description
Gene3DG3DSA:3.30.160.609.3E-496118IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028096116IPR007087Zinc finger, C2H2
SuperFamilySSF576671.6E-6358385No hitNo description
PfamPF139128.4E-6362387IPR007087Zinc finger, C2H2
PROSITE profilePS501578.974363390IPR007087Zinc finger, C2H2
SMARTSM0035512363385IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280365385IPR007087Zinc finger, C2H2
PfamPF139121.0E-7443466IPR007087Zinc finger, C2H2
SMARTSM003550.033444466IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.85444466IPR007087Zinc finger, C2H2
PROSITE patternPS000280446466IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 511 aa     Download sequence    Send to blast
MEEDRSLRFV CKFCNKKYPC GKSLGGHIRS HVIANSAESE RKVESSMKRN SSSSDDVQQN  60
FPEFVNGQSS YGLRENPKKT WRAAVSGFEF SLERVCKQCG KGFQSMKALC GHMAVHSERD  120
KVNLKDDQSW TSENQKLVVD SSSDTEVEDW IVRTRSSKSK RYDKVIPSSP FNLANNGPLS  180
VSEIDGNEQE EVAVCLMLLS MDYVNRGGVY SFVESSDNNS AVLETKSSSI DMRSDSKYGL  240
NFIHNRTKTN QVKKLGDRKI KETDLDAEII QMEDSDSGYF LDECAKVESD VSFDGFCRND  300
AFVEGSKSLV KENGDDDGHR VSNSTRIGSR KRNPNLWEES CFKTKNGALD AEAQNYPQKR  360
RTYECLNCTK IFNSFQALGG HRPCHKRNNA NESRYESDEN SLHGYNDFRT DSNFDGSTSS  420
RKLTAKDSFP YAEKKIKPQK SKAHICPFCQ RVFKNGQALG GHKRSHFLGG GRKENTSESP  480
VTKPKIPDLL DLNLPAPQED EEDGDSPFFR V
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV30453.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011070953.10.0zinc finger protein 91-like
TrEMBLA0A2Z7B8B90.0A0A2Z7B8B9_9LAMI; Uncharacterized protein
STRINGMigut.L01205.1.p1e-143(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13432255
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.12e-68C2H2-like zinc finger protein