PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV30100.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family HD-ZIP
Protein Properties Length: 294aa    MW: 33263.5 Da    PI: 4.7768
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV30100.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.42.5e-1855106556
                 SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 +++  eq+++Le+ Fe ++++  +++ +LA++lgL+ rqV +WFqNrRa++k
  KZV30100.1  55 RRLGVEQVKALEKNFEVENKLEPDRKVKLAQELGLQPRQVAIWFQNRRARWK 106
                 467789*********************************************9 PP
2HD-ZIP_I/II130.18.9e-4252144193
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                  ekkrrl  eqvk+LE++Fe e+kLep+rKv+la+eLglqprqva+WFqnrRAR+ktkqlE+dy+ Lk++ydalk++ e+L++++e L++e++e
   KZV30100.1  52 EKKRRLGVEQVKALEKNFEVENKLEPDRKVKLAQELGLQPRQVAIWFQNRRARWKTKQLERDYDILKASYDALKHSYENLQRDNEILTKEIQE 144
                  69***************************************************************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.84E-1944110IPR009057Homeodomain-like
PROSITE profilePS5007116.97348108IPR001356Homeobox domain
SMARTSM003892.8E-1751112IPR001356Homeobox domain
CDDcd000861.48E-1653109No hitNo description
PfamPF000461.7E-1554106IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.3E-1957115IPR009057Homeodomain-like
PRINTSPR000317.0E-67988IPR000047Helix-turn-helix motif
PROSITE patternPS00027083106IPR017970Homeobox, conserved site
PRINTSPR000317.0E-688104IPR000047Helix-turn-helix motif
PfamPF021832.7E-17108148IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009637Biological Processresponse to blue light
GO:0009788Biological Processnegative regulation of abscisic acid-activated signaling pathway
GO:0030308Biological Processnegative regulation of cell growth
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0048573Biological Processphotoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MKRPNSSDSL GDLMSICPES TDEHDQENNP IYSGEFGTFV EGLVEESKHV MEKKRRLGVE  60
QVKALEKNFE VENKLEPDRK VKLAQELGLQ PRQVAIWFQN RRARWKTKQL ERDYDILKAS  120
YDALKHSYEN LQRDNEILTK EIQELKSKDG EDGKSESKVS AKEEATMVSD VEKGKLGHET  180
VACEHDNNHV SYIGNNGSSD STDSSAILNE DNSPHQFLDS KNGSGSTSSM NLSFKFSDFK  240
VSAASVVADA HNPHTQLQSV KIEEHNFLDE ESCSSLFSDA QAPTLHWYFS DEWN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1100108RRARWKTKQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00271DAPTransfer from AT2G22430Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV30100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011097532.11e-106homeobox-leucine zipper protein ATHB-6
RefseqXP_022884552.11e-106homeobox-leucine zipper protein ATHB-6-like isoform X1
TrEMBLA0A2Z7B8R50.0A0A2Z7B8R5_9LAMI; Homeobox-leucine zipper protein ATHB-6-like
STRINGMigut.H02327.1.p4e-92(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27182453
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22430.18e-62homeobox protein 6