PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KZV30078.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
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Family | C2H2 | ||||||||
Protein Properties | Length: 226aa MW: 25381.4 Da PI: 9.4137 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14 | 0.00014 | 59 | 81 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C++ F ++ L H++ H KZV30078.1 59 FSCNYCSRKFYSSQALGGHQNAH 81 89******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.4E-6 | 56 | 86 | No hit | No description |
PROSITE profile | PS50157 | 11.655 | 59 | 86 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 61 | 81 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MEEQIQAQKE NRINPDLEFD LNLSTKDFSD QTSNQELTLF QISVPPHDSM LHESEPRVFS 60 CNYCSRKFYS SQALGGHQNA HKRERTIAKR GQRHCSGGAY FQHRDMAELR YPSMASLPLH 120 GSFNRSLGIQ VHSTIHKPSV LVPPFNQPGW FRKPLDQHPS IGRLAAENYH QVGQSSGGGA 180 ARFDGGRRFY PVAVDATGGF RSDASSQLKS RGNPEDMKKL DLSLKL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KZV30078.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011082208.1 | 2e-76 | zinc finger protein 1 | ||||
TrEMBL | A0A2Z7B7Z9 | 1e-168 | A0A2Z7B7Z9_9LAMI; Zinc finger protein 1 | ||||
STRING | VIT_09s0002g09080.t01 | 2e-66 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5827 | 22 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G80730.1 | 2e-39 | zinc-finger protein 1 |