PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV30003.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family C2H2
Protein Properties Length: 482aa    MW: 54245.8 Da    PI: 8.7367
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV30003.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.94.1e-06100120323
                 ETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                 C+ CgksF ++  L  H+++H
  KZV30003.1 100 CKECGKSFQSWKALFGHMKSH 120
                 ********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.97E-9832No hitNo description
PfamPF139121.5E-61033IPR007087Zinc finger, C2H2
PROSITE profilePS501579.2031032IPR007087Zinc finger, C2H2
SMARTSM003550.181032IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002801232IPR007087Zinc finger, C2H2
SuperFamilySSF576672.97E-993120No hitNo description
PROSITE profilePS5015711.32398125IPR007087Zinc finger, C2H2
SMARTSM003550.00498120IPR015880Zinc finger, C2H2-like
PfamPF139127.5E-8100120IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.3E-4100121IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280100120IPR007087Zinc finger, C2H2
PfamPF139126.1E-12324348IPR007087Zinc finger, C2H2
PROSITE profilePS501579.452324351IPR007087Zinc finger, C2H2
SuperFamilySSF576675.42E-7324346No hitNo description
SMARTSM003550.11324346IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280326346IPR007087Zinc finger, C2H2
SuperFamilySSF576675.42E-7392419No hitNo description
PfamPF139123.4E-10397420IPR007087Zinc finger, C2H2
PROSITE profilePS501578.787397419IPR007087Zinc finger, C2H2
SMARTSM003550.19397419IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280399419IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MEEGQEKRMH ICKFCSKSFP CGRSLGGHMR SHLISISSDR DRKFQENRPP PHTDGENDPK  60
FDKLSEFGSP SSYVLRENPK KTRKFSKTSG EDTLLQGKMC KECGKSFQSW KALFGHMKSH  120
SVSRKIAKSS EEDSWDSQSD NESAAAPLCK KKRSNRVKRY TTTTNSSNLA SFSPCVSEID  180
QQEQEEVALS LIMLSRDTGN WVDMNSSDSC YNSLDVSEAK KFCKISGKGS YCSESKFKKS  240
NDELKNTRKK RDLDQESEVN SPRNLIQKSG LDQFEGLKFN KTKSSKRKCI DSNDSEVSLP  300
VESYKSPFAY SPSDSHDFEK TSSFLCTVCQ KSFPSYQALG GHRASHRKFK GFCAPRSENC  360
SLETENSPFQ STKSIEKISV FATKTSKEVG FLKIKEHECP ICFKIFPSGQ ALGGHKRSHL  420
ISDQPKSTTH PSVVIQVQAS KSTRDFLDLN LPAPVEEEWW IGISNDHEIG NEHKPLLSFL  480
SS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1237250KKSNDELKNTRKKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV30003.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011072829.11e-142zinc finger protein ZAT4-like
TrEMBLA0A2Z7B7200.0A0A2Z7B720_9LAMI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44812241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.11e-45C2H2-like zinc finger protein