PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KZV29917.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 257aa MW: 29280.1 Da PI: 9.3329 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 53.1 | 5.5e-17 | 117 | 171 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++k q +Lee F+++ +++ ++++eLA++l+L rqV vWFqNrRa+ k KZV29917.1 117 RKKLRLNKIQSSRLEESFKRHTTLNPKQKQELARELKLRPRQVEVWFQNRRARTK 171 778889999********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 116.1 | 2.1e-37 | 117 | 207 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +kk+rl+k q++ LEesF+++++L+p++K+elareL+l+prqv+vWFqnrRARtk+kq+E d+e L++++d+l++en+rL+ e +eL+ +lk KZV29917.1 117 RKKLRLNKIQSSRLEESFKRHTTLNPKQKQELARELKLRPRQVEVWFQNRRARTKLKQTELDCELLRKCCDRLTDENRRLHMELKELK-ALK 207 69*************************************************************************************9.565 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.5E-15 | 96 | 174 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.427 | 113 | 173 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.7E-14 | 115 | 177 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.75E-16 | 115 | 182 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 1.8E-14 | 117 | 171 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.06E-14 | 117 | 174 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 148 | 171 | IPR017970 | Homeobox, conserved site |
Pfam | PF02183 | 1.9E-8 | 173 | 207 | IPR003106 | Leucine zipper, homeobox-associated |
SMART | SM00340 | 6.5E-21 | 173 | 216 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MGFDEPSKTR LDLGLGISST STADAAHVNA HRFWKISEPS LTLSLCGGTE NQIHAAKTVD 60 FDDLNRVFED RETDDLFRQD STGASSLSNL SVKREREHRS SEDEVGVQRA YRGEDERKKL 120 RLNKIQSSRL EESFKRHTTL NPKQKQELAR ELKLRPRQVE VWFQNRRART KLKQTELDCE 180 LLRKCCDRLT DENRRLHMEL KELKALKSAQ PLYMQLPAAT LTMCPSCERI HGHGRGGGVA 240 ETSAKGSFTI SFKPALV |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 165 | 173 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KZV29917.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011099420.1 | 2e-89 | homeobox-leucine zipper protein HAT22-like | ||||
Swissprot | P46604 | 9e-68 | HAT22_ARATH; Homeobox-leucine zipper protein HAT22 | ||||
TrEMBL | A0A2Z7BD95 | 0.0 | A0A2Z7BD95_9LAMI; Uncharacterized protein | ||||
STRING | Solyc02g091930.2.1 | 1e-84 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA290 | 24 | 186 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37790.1 | 4e-70 | HD-ZIP family protein |
Publications ? help Back to Top | |||
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